YRC Public Data Repository - Protein Structure Prediction

Protein:	Y1099_ARATH
Organism:	Arabidopsis thaliana
Length:	432 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1099_ARATH.

Description	E-value	Query Range	Subject Range
GCST_CARHZ - Aminomethyltransferase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901...	409.0	[0..70]	[424..4]
GCST_THETN - Aminomethyltransferase OS=Thermoanaerobacter tengcongensis GN=gcvT PE=3 SV=1 GCST_CALS4 - Aminomethyltransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM... gi\|214035115, gi... - gi\|254478933\|ref\|ZP_05092294.1\| glycine cleavage system T protein [Carboxydibrachium pacificum DSM 1...	409.0	[0..70]	[416..10]
GCST_DESHD - Aminomethyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=gcvT PE=3 SV=1	405.0	[0..70]	[424..4]
GCST_DESHY - Aminomethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=gcvT PE=3 SV=1	404.0	[0..70]	[424..4]
GCST_DESRM - Aminomethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=gcvT PE=3 SV=1	399.0	[0..70]	[423..4]
GCST_HALOH - Aminomethyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvT PE=3 SV...	396.0	[0..70]	[420..1]
GCST_BACHD - Aminomethyltransferase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 915... GCST_BACHD - Aminomethyltransferase OS=Bacillus halodurans GN=gcvT PE=3 SV=1	395.0	[0..70]	[424..4]
gi\|228648434, gi... - gi\|229135049\|ref\|ZP_04263854.1\| Aminomethyltransferase [Bacillus cereus BDRD-ST196], gi\|228648434\|gb... gi\|229013446, gi... - gi\|229013446\|ref\|ZP_04170583.1\| Aminomethyltransferase [Bacillus mycoides DSM 2048], gi\|228747858\|gb... GCST_BACWK - Aminomethyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=gcvT PE=3 SV=1	392.0	[0..70]	[424..4]
GCST_ALKOO - Aminomethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=gcvT PE=3 SV=1	392.0	[0..70]	[420..4]
GCST_THEPX - Aminomethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=gcvT PE=3 SV=1 gi\|242256016, gi... - gi\|242256016\|ref\|ZP_04800914.1\| glycine cleavage system T protein [Thermoanaerobacter sp. X513], gi\|...	392.0	[0..70]	[416..4]

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Predicted Domain #1

Region A:
Residues: [1-432]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLLQSCKDM AMMMRIDSVS HITNTALLPC LYNGTVLRRR SLSLRKCGFR ERKFQLRCVS  60
   61 ASSDSLQFDF SPPPIDHDFL DTISVSGGKV SEDGVVESFD NDDEALDAFD NGVVVVDLSH 120
  121 FGRIRVSGDD RAHFLHNQTT ANFESLYEGQ GCDTVFVTPT ARTIDIAHAW IMKNAILLTV 180
  181 SPTTCQSIIE MLNKYIFFAD KVEIKDITKQ TCLFALAGPK SNQIMSKLNL GDLIGQPYGR 240
  241 HQHYSFDGMP ITVGVGSLIS DEGFTMLMSP GGAVSVWKTL LAEGAIPMGS VAWEKLRITQ 300
  301 GRPAPERELS KEFNVLEAGL WNSISLNKGC YKGQETIARL MTYDGIKQRL CGLNLSAPSE 360
  361 PGSTITVDGK KVGKLTSYTG GKNGSGHFGL GYIKKQAASI GNTVTVGEDI SGIVSEVPYL 420
  421 ARQHPPSANS SS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	1yx2A
Description:	Crystal Structure of the Probable Aminomethyltransferase from Bacillus subtilis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits