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View Structure Prediction Details

Protein: gi|107738200, gi...
Organism: Arabidopsis thaliana
Length: 182 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107738200, gi....

Description E-value Query
Range
Subject
Range
gi|63101091 - gi|63101091|gb|AAY33170.1| small ribosomal protein 4 [Platyneuron laticostatum]
202.0 [0..12] [181..1]

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Predicted Domain #1
Region A:
Residues: [1-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLKYHEKK LIKKVNFLEW KREGNHRENE ITYRYHMGSR DDYKKYSGLC RMVQKLTNIM  60
   61 KQMDPADPFR IQMTDMLLEK LYNMGVIPTR KSLTLTERLS VSSFCRRRLS TVLVHLKFAE 120
  121 HHKEAVTYIE QGHVRVGPET ITDPAFLVTR NMEDFITWVD SSKIKRKVLE YNDTLDDYDM 180
  181 LA

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Detection Method: PSI-BLAST
Confidence: 36.30103
Match: 1vs5D
Description: No description for 1vs5D was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 8.55021676512691 bayes_pls_golite062009
structural molecule activity 7.96033008326331 bayes_pls_golite062009
RNA binding 3.32539644009264 bayes_pls_golite062009
binding 1.62697242685211 bayes_pls_golite062009
nucleic acid binding 1.5099313198888 bayes_pls_golite062009
protein binding 0.255198885489521 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle