YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|186512105, gi...
Organism:	Arabidopsis thaliana
Length:	415 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|186512105, gi....

Description	E-value	Query Range	Subject Range
gi\|18415698 - gi\|18415698\|ref\|NP_567628.1\| unknown protein [Arabidopsis thaliana]	410.0	[0..1]	[408..1]
gi\|92867892 - gi\|92867892\|gb\|ABE78013.1\| Peptide chain release factor 2 [Medicago truncatula]	283.0	[0..9]	[384..49]
gi\|125562163 - gi\|125562163\|gb\|EAZ07611.1\| hypothetical protein OsI_29862 [Oryza sativa Indica Group] gi\|50947587, gi\|... - gi\|51965018\|ref\|XP_507293.1\| PREDICTED P0711H09.20 gene product [Oryza sativa (japonica cultivar-gro...	277.0	[0..73]	[406..51]
gi\|46406291 - gi\|46406291\|emb\|CAG25777.1\| putative translation releasing factor 2 [Cucumis sativus]	242.0	[0..33]	[384..33]
gi\|110639213, gi... - gi\|110639213\|ref\|YP_679422.1\| peptide chain release factor 2 [Cytophaga hutchinsonii ATCC 33406], gi... gi\|48853686 - gi\|48853686\|ref\|ZP_00307853.1\| COG1186: Protein chain release factor B [Cytophaga hutchinsonii]	231.0	[0..76]	[398..7]
gi\|89890713, gi\|... - gi\|89890713\|ref\|ZP_01202222.1\| peptide chain release factor 2 (RF-2) [Flavobacteria bacterium BBFL7]...	193.0	[0..76]	[389..26]

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Predicted Domain #1

Region A:
Residues: [1-415]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGALFRNAS LCARRIILSS RISPNVPFLT PIAAPAPPKF RFFSSESGEN STTATESSPT  60
   61 DSSDKKDLVV EDVSNKELKS RIDKSFNEGN EDALPGVIEA LLQRRLVDKH AETDDELMEK 120
  121 IESLPFKDDV KDEDFESDFE EAHSTDEELE DLYNSPEYVA EKMRKKEFFN MDDNKWDHMI 180
  181 REGIQHGCLT DTKQCEEILE DMLKWDQLLP DDLKKKVEAK FNELGDMCER GEIEAEAAYE 240
  241 LFKEFEDEMV IQYGDQMEAE GPPQFGETDT SDRNTDLDDP SGKGPILRWQ SRIVFAPGGD 300
  301 AWHPKNRKVK MSVTVKELGL SNHQAKRLRE LVGKRYHSGK DELTITCERF EHREENRKDC 360
  361 LRTLYGLIEE AGKANKIAED IRTSYVKQRL RASPAFMQKL QAKIIRSKES NAINA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1gqeA
Description:	Polypeptide chain release factor 2 (RF2)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits