YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51968886, gi\|...
Organism:	Arabidopsis thaliana
Length:	316 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51968886, gi|....

Description	E-value	Query Range	Subject Range
gi\|146642 - gi\|146642\|gb\|AAA24078.1\| protease La (lon)	238.0	[0..64]	[313..2]
gi\|108808641, gi... - gi\|108808641\|ref\|YP_652557.1\| DNA-binding ATP-dependent protease La [Yersinia pestis Antiqua], gi\|10... gi\|145600050, gi... - gi\|145600050\|ref\|YP_001164126.1\| DNA-binding ATP-dependent protease La [Yersinia pestis Pestoides F]... gi\|22124936, gi\|... - gi\|22124936\|ref\|NP_668359.1\| DNA-binding ATP-dependent protease La [Yersinia pestis KIM], gi\|2195777... gi\|45435482, gi\|... - gi\|45440625\|ref\|NP_992164.1\| DNA-binding ATP-dependent protease La [Yersinia pestis biovar Microtus ... gi\|108774748, gi... - gi\|108811100\|ref\|YP_646867.1\| DNA-binding ATP-dependent protease La [Yersinia pestis Nepal516], gi\|1...	235.0	[0..48]	[313..4]
gi\|117622699, gi... - gi\|117622699\|ref\|YP_851612.1\| DNA-binding ATP-dependent protease La [Escherichia coli APEC O1], gi\|1...	235.0	[0..50]	[313..3]
LON_SHIDS - Lon protease OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lon PE=3 SV=1	235.0	[0..64]	[313..2]
gi\|124498426, gi... - gi\|124531648\|ref\|ZP_01701836.1\| ATP-dependent protease La [Escherichia coli B], gi\|124498426\|gb\|EAY4... gi\|91209513, gi\|... - gi\|91209513\|ref\|YP_539499.1\| DNA-binding ATP-dependent protease La [Escherichia coli UTI89], gi\|9107... gi\|26246450, gi\|... - gi\|26246450\|ref\|NP_752489.1\| DNA-binding ATP-dependent protease La [Escherichia coli CFT073], gi\|261... gi\|227838636, gi... - gi\|227884550\|ref\|ZP_04002355.1\| DNA-binding ATP-dependent protease La [Escherichia coli 83972], gi\|2... gi\|209743834, gi... - gi\|209743840\|gb\|ACI70227.1\| endopeptidase La [Escherichia coli], gi\|209743834\|gb\|ACI70224.1\| endopep... gi\|237707566, gi... - gi\|237707566\|ref\|ZP_04538047.1\| DNA-binding ATP-dependent protease La [Escherichia sp. 3_2_53FAA], g...	235.0	[0..50]	[313..3]
gi\|25289972 - pir\|\|A85541 hypothetical protein lon [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|15800169, gi\|... - gi\|15800169\|ref\|NP_286181.1\| DNA-binding ATP-dependent protease La [Escherichia coli O157:H7 EDL933]...	234.0	[0..50]	[313..3]
gi\|187427314, gi... - gi\|75177623\|ref\|ZP_00697704.1\| COG0466: ATP-dependent Lon protease, bacterial type [Shigella boydii ... gi\|82542927, gi\|... - gi\|82542927\|ref\|YP_406874.1\| DNA-binding ATP-dependent protease La [Shigella boydii Sb227], gi\|81244...	234.0	[0..64]	[313..2]
gi\|189362422, gi... - gi\|189362422\|gb\|EDU80841.1\| ATP-dependent protease La [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|25289966 - pir\|\|E90690 endopeptidase La [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi\|195940566 - gi\|195940566\|ref\|ZP_03085948.1\| DNA-binding ATP-dependent protease La [Escherichia coli O157:H7 str.... gi\|13359950, gi\|... - gi\|15829747\|ref\|NP_308520.1\| DNA-binding ATP-dependent protease La [Escherichia coli O157:H7 str. Sa... gi\|254791623, gi... - gi\|254791623\|ref\|YP_003076460.1\| DNA-binding ATP-dependent protease La [Escherichia coli O157:H7 str... gi\|13359950, gi\|... - gi\|15829747\|ref\|NP_308520.1\| endopeptidase La [Escherichia coli O157:H7], gi\|13359950\|dbj\|BAB33916.1... gi\|168754544, gi... - gi\|189357958\|gb\|EDU76377.1\| ATP-dependent protease La [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|189369044, gi... - gi\|189369044\|gb\|EDU87460.1\| ATP-dependent protease La [Escherichia coli O157:H7 str. EC4501], gi\|168...	233.0	[0..64]	[313..2]
gi\|251783948, gi... - gi\|251783948\|ref\|YP_002998252.1\| hypothetical protein B21_00395 [Escherichia coli BL21], gi\|24237622... gi\|238860849, gi... - gi\|238899727\|ref\|YP_002925523.1\| DNA-binding ATP-dependent protease La [Escherichia coli BW2952], gi... gi\|215263592, gi... - gi\|215485520\|ref\|YP_002327951.1\| DNA-binding ATP-dependent protease La [Escherichia coli O127:H6 str... gi\|218553006, gi... - gi\|218553006\|ref\|YP_002385919.1\| DNA-binding ATP-dependent protease La [Escherichia coli IAI1], gi\|2... gi\|218693902, gi... - gi\|218693902\|ref\|YP_002401569.1\| DNA-binding ATP-dependent protease La [Escherichia coli 55989], gi\|... LON_ECOLI - ATP-dependent protease La (EC 3.4.21.53) - Escherichia coli gi\|218698649, gi... - gi\|218698649\|ref\|YP_002406278.1\| DNA-binding ATP-dependent protease La [Escherichia coli IAI39], gi\|... gi\|218703723, gi... - gi\|218703723\|ref\|YP_002411242.1\| DNA-binding ATP-dependent protease La [Escherichia coli UMN026], gi... LON_ECOL6 - Lon protease OS=Escherichia coli O6 GN=lon PE=2 SV=1 EG10542 - DNA-binding ATP-dependent protease La / DNA-binding, ATP-dependent protease LA; lon mutants form lon... gi\|73854491, gi\|... - gi\|74311014\|ref\|YP_309433.1\| DNA-binding ATP-dependent protease La [Shigella sonnei Ss046], gi\|73854... EG10542 - DNA-binding ATP-dependent protease La / DNA-binding, ATP-dependent protease LA; lon mutants form lon... gi\|85674579, gi\|... - gi\|89107309\|ref\|AP_001089.1\| DNA-binding ATP-dependent protease La [Escherichia coli str. K-12 subst... LON_ECOL6 - Lon protease OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=lon PE=3 SV=1 gi\|157065646, gi... - gi\|75194660\|ref\|ZP_00704730.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|75209804 - gi\|75209804\|ref\|ZP_00710006.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|194437366, gi... - gi\|83587105\|ref\|ZP_00925735.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|75189508, gi\|... - gi\|75189508\|ref\|ZP_00702775.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|170021188, gi... - gi\|170021188\|ref\|YP_001726142.1\| DNA-binding ATP-dependent protease La [Escherichia coli ATCC 8739],... gi\|75239064, gi\|... - gi\|75239064\|ref\|ZP_00723046.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|110342292, gi... - gi\|110640700\|ref\|YP_668428.1\| DNA-binding ATP-dependent protease La [Escherichia coli 536], gi\|11034... gi\|169887860, gi... - gi\|170080025\|ref\|YP_001729345.1\| DNA-binding ATP-dependent protease La [Escherichia coli str. K-12 s... gi\|193064117, gi... - gi\|75257915\|ref\|ZP_00729393.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|170519957, gi... - gi\|170682239\|ref\|YP_001742583.1\| ATP-dependent protease La [Escherichia coli SMS-3-5], gi\|170519957\|... gi\|75226958 - gi\|75226958\|ref\|ZP_00713833.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|188494694, gi... - gi\|188494694\|ref\|ZP_03001964.1\| ATP-dependent protease La [Escherichia coli 53638], gi\|188489893\|gb\|... gi\|75238192 - gi\|75238192\|ref\|ZP_00722193.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|209910915, gi... - gi\|209917656\|ref\|YP_002291740.1\| DNA-binding ATP-dependent protease La [Escherichia coli SE11], gi\|2... gi\|253972410, gi... - gi\|254160509\|ref\|YP_003043617.1\| DNA-binding ATP-dependent protease La [Escherichia coli B str. REL6... gi\|254287313, gi... - gi\|254287313\|ref\|YP_003053061.1\| DNA-binding ATP-dependent protease La [Escherichia coli BL21(DE3)],...	233.0	[0..64]	[313..2]

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Predicted Domain #1

Region A:
Residues: [1-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFSTAELNG ESLNPITAIH IFPMTSTLIS SNLSSSFFPT QNIHRIRIPT TSIPGSFNIR  60
   61 ARRSKIVAKS LDLPLLPFSM SEVLVPTESK TLHLYEARYL ALLEESMKRK KNMFVHFILD 120
  121 PISISETATE ASFAARYGCL VLIENVERLD VGALVSIRGA GRVKISRFLG ADPYLSGEVR 180
  181 PIQDRMNYES SNELTSKISQ LKESIKNLNS LEIKLKAPAD SPLQTRLINS LNWAEDEPPV 240
  241 DFDESFVPSL QERLSFSAFQ PISGSTKSEL SRLQQEKIKA MDMKDTIERL ELSMGLIKEN 300
  301 ISSIAAKLAI QSLDIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	1zboA
Description:	Crystal Structure of the Hypothetical Protein BPP1347 from Bordetella parapertussis, Northeast Structural Genomics Target BoR27.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits