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View Structure Prediction Details

Protein: CIPKP_ARATH
Organism: Arabidopsis thaliana
Length: 488 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIPKP_ARATH.

Description E-value Query
Range
Subject
Range
gi|25090076, gi|... - gi|25090076|gb|AAN72221.1| At5g25110/T11H3_120 [Arabidopsis thaliana], gi|15215664|gb|AAK91377.1| AT...
433.0 [0..1] [488..1]

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Predicted Domain #1
Region A:
Residues: [1-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKLKLYPL LNHSSVFHPD SRYQSAPTME EEQQQLRVLF AKYEMGRLLG KGTFGKVYYG  60
   61 KEITTGESVA IKIINKDQVK REGMMEQIKR EISIMRLVRH PNIVELKEVM ATKTKIFFIM 120
  121 EYVKGGELFS KIVKGKLKED SARKYFQQLI SAVDFCHSRG VSHRDLKPEN LLVDENGDLK 180
  181 VSDFGLSALP EQILQDGLLH TQCGTPAYVA PEVLRKKGYD GAKGDIWSCG IILYVLLAGF 240
  241 LPFQDENLMK MYRKIFKSEF EYPPWFSPES KRLISKLLVV DPNKRISIPA IMRTPWFRKN 300
  301 INSPIEFKID ELEIQNVEDE TPTTTATTAT TTTTPVSPKF FNAFEFISSM SSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.69897
Match: 1zmuA
Description: Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Wild type
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [354-488]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDLSSLFESK RKLRSMFTSR WSASEIMGKL EGIGKEMNMK VKRTKDFKVK LFGKTEGRKG  60
   61 QIAVTAEVFE VAPEVAVVEL CKSAGDTLEY NRLYEEHVRP ALEEIVWSWH GDNHNNNIVK 120
  121 SNGNYVSDEN SGSDC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 2ehbD
Description: No description for 2ehbD was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle