| Protein: | NAP1C_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 374 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAP1C_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
326.0 | [0..1] | [374..1] |
|
Region A: Residues: [1-296] |
1 11 21 31 41 51
| | | | | |
1 MSNDKDSFNV SDLTSALKDE DRAGLVNALK NKLQNLAGQH SDVLENLTPK IRRRVEVLRE 60
61 IQGKHDEIET KFREERAALE AKYQKLYQPL YNKRYEIVNG ATEVEGAPED AKMDQGDEKT 120
121 AEEKGVPSFW LTALKNNDVI SEEITERDEG ALIYLKDIKW CKIEEPKGFK LEFFFDQNPY 180
181 FKNTLLTKAY HMIDEDEPLL EKAIGTEIDW YPGKCLTQKI LKKKPKKGAK NAKPITKTED 240
241 CESFFNFFNP PQVPDDDEDI DEERAEELQN LMEQDYDIGS TIREKIIPHA VSWFTG
|
| Detection Method: |  |
| Confidence: | 55.69897 |
| Match: | 2ayuA |
| Description: | The structure of nucleosome assembly protein suggests a mechanism for histone binding and shuttling |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| histone binding | 4.83364158381373 | bayes_pls_golite062009 |
| binding | 2.47653887993806 | bayes_pls_golite062009 |
| protein binding | 1.48698502617247 | bayes_pls_golite062009 |
| nucleic acid binding | 0.320444049924598 | bayes_pls_golite062009 |
| DNA binding | 0.235974054244229 | bayes_pls_golite062009 |
|
Region A: Residues: [297-374] |
1 11 21 31 41 51
| | | | | |
1 EAIEGEEFEI DNDDEDDIDE DEDEDEEDED EDEEEDDEDE EEEVSKTKKK PSVLHKKGGR 60
61 PQVTDDQQGE RPPECKQQ
|
| Detection Method: | |
| Confidence: | 0.977 |
| Match: | 2d57A |
| Description: | Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography |
Matching Structure (courtesy of the PDB): |
|
