YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51091926, gi\|...
Organism:	Oryza sativa Japonica Group
Length:	405 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51091926, gi|....

Description	E-value	Query Range	Subject Range
gi\|77551892, gi\|... - gi\|77551892\|gb\|ABA94689.1\| expressed protein [Oryza sativa (japonica cultivar-group)], gi\|108864580\|...	327.0	[0..32]	[405..26]
gi\|18397898, gi\|... - gi\|56790196\|gb\|AAW30015.1\| At2g15695 [Arabidopsis thaliana], gi\|54606848\|gb\|AAV34772.1\| At2g15695 [A...	302.0	[0..6]	[405..4]
gi\|92875375 - gi\|92875375\|gb\|ABE83368.1\| Protein of unknown function DUF829, eukaryotic [Medicago truncatula]	296.0	[0..5]	[405..10]
gi\|48823775 - ref\|ZP_00285269.1\| COG1073: Hydrolases of the alpha/beta superfamily [Enterococcus faecium] gi\|69249877, gi\|... - gi\|69249877\|ref\|ZP_00605056.1\| conserved hypothetical protein [Enterococcus faecium DO], gi\|68194068...	175.0	[0..2]	[271..68]
gi\|78066438, gi\|... - gi\|78066438\|ref\|YP_369207.1\| Alpha/beta hydrolase [Burkholderia sp. 383], gi\|77967183\|gb\|ABB08563.1\|...	173.0	[0..3]	[267..6]
gi\|171990241, gi... - gi\|68054022\|ref\|ZP_00538187.1\| conserved hypothetical protein [Exiguobacterium sibiricum 255-15], gi...	172.0	[0..7]	[276..71]
gi\|68529012, gi\|... - gi\|94314231\|ref\|YP_587440.1\| alpha/beta hydrolase fold [Ralstonia metallidurans CH34], gi\|93358083\|g...	171.0	[0..2]	[267..3]
gi\|81428880, gi\|... - gi\|81428880\|ref\|YP_395880.1\| putative extracellular hydrolase precursor (lipase/esterase) [Lactobaci...	168.0	[0..2]	[269..66]
gi\|19914821, gi\|... - gi\|20089870\|ref\|NP_615945.1\| chloride peroxidase [Methanosarcina acetivorans C2A], gi\|19914821\|gb\|AA...	168.0	[0..3]	[267..6]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPGCGGRFY WAPAPPSPSA AGARGVVVVF GWVWSDEAQL RPFVELYASL GWRCLVCHPD  60
   61 LVALYLSEKA ASLASGVISE LVKEFKVKPL PTVFASFSGG SKGCMYKVIQ LLDGNCEGDA 120
  121 TMKDYRLVRN CICGQIYDSG PVDFFSDVGT QFLQNPMIGN SSRPSMLLSW MTKALASGMD 180
  181 TLFPSRIEAQ RAEYWHTLYS SAGLGPVLML CSEDDDLAPC HVVCGFARRL IELGTDVKVI 240
  241 KWSDSPHVGH YMLHEAEYRS AVNDTLIKAL VTFCHRSQLN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.154902
Match:	1a8sA
Description:	CHLOROPEROXIDASE F/PROPIONATE COMPLEX
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [281-405]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATSDQEYKIA HSVCSLHNVA ANSNERLRRV ANGPSDHFFL PSSKDHNESR DPDSLIDEQR  60
   61 RQLSYPPSME PQGVLGQILF DVCVPKNVEG WDIKPTVSPN GRPTLASARQ LGPFNPIKYF 120
  121 RRSRL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits