YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51091318, gi\|...
Organism:	Oryza sativa Japonica Group
Length:	438 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51091318, gi|....

Description	E-value	Query Range	Subject Range
MGAT2_RAT - Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat2...	671.0	[0..9]	[429..2]
gi\|61864843 - gi\|61864843\|ref\|XP_590294.1\| PREDICTED: similar to beta-1,2-N-acetylglucosaminyltransferase II [Bos ...	663.0	[0..9]	[429..2]
MGAT2_PIG - Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Sus scrofa GN=MGAT2 PE=3 S...	662.0	[0..9]	[429..2]
MGAT2_MOUSE - Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Mus musculus GN=Mgat2 PE=1...	661.0	[0..9]	[429..2]
gi\|57090127 - gi\|57090127\|ref\|XP_537434.1\| PREDICTED: similar to Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylgl...	660.0	[0..9]	[429..2]
gi\|114652879 - gi\|114652879\|ref\|XP_001152220.1\| PREDICTED: mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylgluc...	659.0	[0..9]	[429..2]
MGAT2 - mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase gi\|124000699, gi... - gi\|124000699\|gb\|ABM87858.1\| mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransfer...	659.0	[0..9]	[429..2]

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Predicted Domain #1

Region A:
Residues: [1-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASSHHRA RLRSRAAPLL AVVVLAVLAL TAILRASRHD FVPGAARAAA GVGGGGNNHT  60
   61 IAQRKILLDP DFTPRLPRQS ALSLSLSQRN ALPPRNADRF PRLPDGHLNI VLYVHNRPRY 120
  121 LRLVVDSLSR AHGIGEALLI VSHDGYFPEM DKIVQTITFC QVKQIFAPYS PHLFPEAFPG 180
  181 VSSGDCQGKD KAAEKHCQGD PDQYGNHRSP RIVSLKHHWW WMMNTVWDGL DETRDFDGHI 240
  241 LFIEEDHYIF PNAYRNAQLL VDLKPSKCPQ CYAINLAPSD V

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [282-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAKGEGWESL VAEKMGNIGY AFNRTVWRKI HAKAKQFCTF DEYNWDITMW ATVYPSF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.825	N/A	N/A	a.5.10	Description not found.

Predicted Domain #3

Region A:
Residues: [339-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSPVYSLRGP RRSAAHFGKC GLHQGQGLSN VCVDNGDATV QLDAIDKVPN IKANWPVHII  60
   61 KRQEGYQAGF KGWGGWGDKR DQELCLSFAY MHHFKDPSSP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits