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View Structure Prediction Details

Protein: gi|51090392, gi|...
Organism: Oryza sativa Japonica Group
Length: 243 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51090392, gi|....

Description E-value Query
Range
Subject
Range
gi|33589798, gi|... - gi|33589798|gb|AAQ22665.1| At1g49590 [Arabidopsis thaliana], gi|15222782|ref|NP_175382.1| formin-bin...
172.0 [0..1] [241..1]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEYWVSQGN KWCDFCKIYI ANNPLSIRTH EIGKRHKDNV TKRLATMQKE GAAKEKEQQQ  60
   61 AARALKQIEA KAKKSYQKDL ENSQRNVDGD T

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.69897
Match: 1uw2A
Description: The structure of the zinc finger from the human spliceosomal protein U1C
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.414217765611205 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [92-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAAPGDGWEF DSTSGYYYDK STGLYFDSNS GFYYSDGLGK WVTQEEAYAW AKTSQANAGQ  60
   61 SSSSQTKPTA SVATVPTIKG GQAPGLVVKK PLNPMRTVKG APSAIAVNKR KREDGKPKVI 120
  121 SKEEEAALKA REAARKRMED REKPLMGLYR SY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle