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View Structure Prediction Details

Protein: gi|115479241, gi...
Organism: Oryza sativa Japonica Group
Length: 150 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115479241, gi....

Description E-value Query
Range
Subject
Range
gi|194452609, gi... - gi|92089582|ref|ZP_01274520.1| Chaperone DnaJ [Lactobacillus reuteri 100-23], gi|91803660|gb|EAS8852...
gi|184153335, gi... - gi|89090684|ref|ZP_01163726.1| Heat shock protein DnaJ [Lactobacillus reuteri JCM 1112], gi|89079488...
gi|227194365, gi... - gi|227531039|ref|ZP_03961088.1| chaperone DnaJ [Lactobacillus reuteri MM4-1A], gi|227194365|gb|EEI74...
gi|227364848, gi... - gi|227364848|ref|ZP_03848895.1| chaperone protein DnaJ [Lactobacillus reuteri MM2-3], gi|227070111|g...
DNAJ_LACRJ - Chaperone protein DnaJ OS=Lactobacillus reuteri (strain JCM 1112) GN=dnaJ PE=3 SV=1
DNAJ_LACRD - Chaperone protein DnaJ OS=Lactobacillus reuteri (strain DSM 20016) GN=dnaJ PE=3 SV=1
133.0 [0..26] [149..94]

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Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAMACGARA GAAFPSPRPA RAPWPPGRFR ALVPAPPALR LGLLRLPPPM ASTIDSPGSS  60
   61 SDFAKRMERA WLISQQPRPN PCSSCQSAGH VECKWCTGTG FFILGNNMLC EVPSKNTKCV 120
  121 ICSGKGFATC ADCKGTGFRA KWLEDPPVDK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.69897
Match: 1nltA
Description: The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle