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View Structure Prediction Details

Protein: gi|15228796, gi|...
Organism: Arabidopsis thaliana
Length: 552 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15228796, gi|....

Description E-value Query
Range
Subject
Range
gi|33640682, gi|... - gi|33862569|ref|NP_894129.1| TPR repeat-containing protein [Prochlorococcus marinus str. MIT 9313], ...
244.0 [0..7] [521..517]

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Predicted Domain #1
Region A:
Residues: [1-552]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIYSVHNGD KKHWWFTHKK IVDKYIKDAR SLMESEEQND VASAIHLLDA ALSISPRSET  60
   61 ALELKARSLL FLRRFKDVVD MLQDYIPSLK LAVNEEDGSY SYEGSSYSSS SSQLSRKLLS 120
  121 DSSPRRDSSF KCFSVSYLKK KIMAGICKNR DQDKQWRYVV LGQACCHLGL MEDALVLLQT 180
  181 GKRLATVEFR RLSVSLSDDS VSLLLSESSS SSSSSSYAFP PRKVSECETV TNLLAHTKNL 240
  241 LRRRSAGFAA FDAGLFADSI RHFSKILDGR RRPAPQGFLA DCYMHRAAAY KSAGKIAEAI 300
  301 ADCNKTLALE PSCIHALETR ATLLETVRCL PDSLHDLEHL KILYNTILRD RKLPGPPWKR 360
  361 HNVKYREIPG KLCELTTKSK KLKAKMANGE IGNVDYYGLV GVRRGCTRSE LDRANLLLCL 420
  421 RHKPDKALAF MERCDFFDQS EISSVKDRAK MSSLLLYRLI QRGYTALAAA IAEEEQRKKM 480
  481 MVLTQMSTKT VEEHEPVEKS GSITLTDFAE IKPGNSNAYQ GVFCRDLAAV GSLLSRTGFN 540
  541 QPIPMKYDAI SC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.39794
Match: 2gw1A
Description: No description for 2gw1A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle