YRC Public Data Repository - Protein Structure Prediction

Protein:	DER21_ARATH
Organism:	Arabidopsis thaliana
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DER21_ARATH.

Description	E-value	Query Range	Subject Range
gi\|50758070 - gi\|50758070\|ref\|XP_415746.1\| PREDICTED: similar to carcinoma related gene [Gallus gallus]	166.0	[0..3]	[242..125]
gi\|72015515, gi\|... - gi\|72015515\|ref\|XP_786599.1\| PREDICTED: similar to Der1-like domain family, member 2 [Strongylocentr...	154.0	[0..3]	[243..4]
DER22_ARATH - Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1	153.0	[0..1]	[244..1]
gi\|54639131, gi\|... - gi\|54639131\|gb\|EAL28533.1\| GA13336-PA [Drosophila pseudoobscura], gi\|125776769\|ref\|XP_001359387.1\| G...	149.0	[0..3]	[241..2]
DER22_MAIZE - Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1	145.0	[0..1]	[229..1]
DERL2_ORYSJ - Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1 gi\|125546477 - gi\|125546477\|gb\|EAY92616.1\| hypothetical protein OsI_14361 [Oryza sativa Indica Group] DERL2_ORYSA - Derlin-2 (OsDerlin 2-1) - Oryza sativa (Rice)	144.0	[0..1]	[229..1]
gi\|116056949 - gi\|116056949\|emb\|CAL53238.1\| Predicted membrane protein (ISS) [Ostreococcus tauri]	141.0	[0..1]	[244..411]
gi\|41053839, gi\|... - gi\|41053839\|ref\|NP_957197.1\| Der1-like domain family, member 3 [Danio rerio], gi\|40352706\|gb\|AAH6466...	139.0	[0..1]	[244..1]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQAVEEWYK QMPIITRSYL TAAVVTTVGC SLEIISPYNL YLNPTLVVKQ YQFWRLVTNF  60
   61 LYFRKMDLDF LFHMFFLARY CKLLEENSFR GKTADFLYML LFGATVLTGI VLIGGMIPYL 120
  121 SVSFSKIIFL SNSLTFMMVY VWSKQNPYIH MSFLGLFTFT AAYLPWVLLG FSILVGASAW 180
  181 GDFLGMIAGH AYYFLAFVYP RMTDRRPLKT PSFLKALFAD EPVVIARPED VRFAHAPFDE 240
  241 IHQD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.154902
Match:	2ic8A
Description:	No description for 2ic8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits