YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18420568, gi\|...
Organism:	Arabidopsis thaliana
Length:	447 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18420568, gi|....

Description	E-value	Query Range	Subject Range
DNJA6_ARATH - Chaperone protein dnaJ A6, chloroplastic OS=Arabidopsis thaliana GN=DJA6 PE=2 SV=2	418.0	[0..1]	[445..1]
gi\|57900655, gi\|... - gi\|57900656\|gb\|AAW57781.1\| putative DnaJ protein [Oryza sativa (japonica cultivar-group)], gi\|579006...	383.0	[0..1]	[447..1]
gi\|16326131 - gi\|16326131\|dbj\|BAB70509.1\| DNAJ homologue [Oryza sativa]	376.0	[0..1]	[435..1]
DNAJ_HALOH - Chaperone protein DnaJ OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dnaJ PE=3 SV...	368.0	[0..80]	[447..1]
DNAJ_BURCC - Chaperone protein DnaJ OS=Burkholderia cenocepacia (strain MC0-3) GN=dnaJ PE=3 SV=1 DNAJ_BURCJ - Chaperone protein DnaJ OS=Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NC... gi\|254246252, gi... - gi\|84356871\|ref\|ZP_00981704.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... DNAJ_BURCA - Chaperone protein DnaJ OS=Burkholderia cenocepacia (strain AU 1054) GN=dnaJ PE=3 SV=1 DNAJ_BURCH - Chaperone protein DnaJ OS=Burkholderia cenocepacia (strain HI2424) GN=dnaJ PE=3 SV=1	365.0	[0..81]	[445..1]
DNAJ_BURCM - Chaperone protein DnaJ OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dnaJ PE=3 SV=1 DNAJ_BURA4 - Chaperone protein DnaJ OS=Burkholderia ambifaria (strain MC40-6) GN=dnaJ PE=3 SV=1	365.0	[0..81]	[445..1]
DNAJ_BURVG - Chaperone protein DnaJ OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=dnaJ PE=3 SV=1	364.0	[0..81]	[445..1]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALIQFGSSC VAQWGILRPR FAVKAFYPSR LESHQDNCIS QINCLGASRS SMFAQGSLPF  60
   61 LSLTGVSPNT HSRRGARFTV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RADTDFYSVL GVSKNATKAE IKSAYRKLAR SYHPDVNKDA GAEDKFKEIS NAYEILSDDE  60
   61 KRSLYDRYGE AGVKGAGMGG MGDYSNPFDL FESLFEGMGG MGGMG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.09691
Match:	1bq0A
Description:	J-DOMAIN (RESIDUES 1-77) OF THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 1-104) OF THE MOLECULAR CHAPERONE DNAJ, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [186-447]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGMGSRGSRS RAIDGEDEYY SLILNFKEAV FGIEKEIEIS RLESCGTCNG SGAKAGTKPT  60
   61 KCKTCGGQGQ VVASTRTPLG VFQQVMTCSP CNGTGEISKP CGACSGDGRV RRTKRISLKV 120
  121 PAGVDSGSRL RVRGEGNAGK RGGSPGDLFA VIEVIPDPVL KRDDTNILYT CKISYVDAIL 180
  181 GTTLKVPTVD GEVDLKVPAG TQPSTTLVMA KKGVPVLNKS KMRGDQLVRV QVEIPKRLSK 240
  241 EEKMLVEELA DMSKNKVANS RR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.522879
Match:	1nltA
Description:	The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits