YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|118489949, gi...
Organism:	Populus trichocarpa x Populus deltoides
Length:	66 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|118489949, gi....

Description	E-value	Query Range	Subject Range
MT3_MALDO - Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1	69.0	[0..1]	[66..1]
gi\|8698921 - gi\|8698921\|gb\|AAF78526.1\|AF195234_1 metallothionein-like protein [Pyrus pyrifolia]	69.0	[0..1]	[66..1]
gi\|3378489 - gi\|3378489\|emb\|CAA07565.1\| metallothionein-like protein [Ribes nigrum]	68.0	[0..3]	[66..2]
MT3_CARPA - Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1	68.0	[0..1]	[66..1]
gi\|18958245 - gi\|18958245\|dbj\|BAB85601.1\| metallothionein type 3 [Brassica juncea]	68.0	[0..1]	[64..1]
gi\|29824926 - gi\|29824926\|gb\|AAO92264.1\| metallothionein-like protein [Arachis hypogaea]	67.0	[0..1]	[66..1]
gi\|225461451, gi... - gi\|7406673\|emb\|CAB85630.1\| putative metallothionein-like protein [Vitis vinifera], gi\|225461453\|ref\|...	67.0	[0..3]	[66..2]
MT3_MUSAC - Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1 gi\|1213512\|gb\|AA... - metallothionein-like protein [Musa acuminata]	66.0	[0..3]	[66..2]
MT3_PRUAV - Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1	65.0	[0..1]	[64..1]
gi\|76496238 - gi\|76496238\|gb\|ABA43635.1\| metallothionein-like protein [Metroxylon sagu]	64.0	[0..3]	[65..2]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTCDNCDC ADKTQCVKKG SSYTADIVET EKSHVYTGVM EVPATENDGK CKCGANCTCT  60
   61 TCTCGH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	4.013228
Match:	PF01439.10
Description:	No description for PF01439.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits