YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|38304185
Organism:	Populus nigra
Length:	174 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38304185.

Description	E-value	Query Range	Subject Range
gi\|169990910, gi... - gi\|48474219\|dbj\|BAD08336.2\| flowering locus T [Populus nigra], gi\|38524446\|dbj\|BAD02371.1\| flowering...	225.0	[0..1]	[174..1]
gi\|28200390 - gi\|28200390\|gb\|AAO31792.1\| SP3D [Lycopersicon esculentum]	215.0	[0..1]	[174..1]
gi\|208609498, gi... - gi\|78058612\|gb\|ABB17667.1\| Hd3a [Oryza sativa (indica cultivar-group)], gi\|78058610\|gb\|ABB17666.1\| H...	214.0	[0..3]	[173..6]
HD3A_ORYSJ - Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica GN=HD3A PE=1 SV=1 gi\|208609520, gi... - gi\|208609520\|dbj\|BAG72298.1\| Hd3a [Oryza rufipogon], gi\|208609512\|dbj\|BAG72294.1\| Hd3a [Oryza rufipo... gi\|225735405, gi... - gi\|225735405\|dbj\|BAH30245.1\| FT-like protein [Oryza sativa Indica Group], gi\|208609506\|dbj\|BAG72291....	213.0	[0..3]	[173..6]
gi\|116237308 - gi\|116237308\|gb\|ABI55199.1\| FT [Hordeum vulgare subsp. spontaneum] gi\|116282905, gi... - gi\|116282905\|gb\|ABJ97441.1\| FT [Hordeum vulgare], gi\|116237312\|gb\|ABI55202.1\| FT [Hordeum vulgare], ... gi\|118743473, gi... - gi\|71648402\|gb\|AAZ38709.1\| FT-like protein [Hordeum vulgare subsp. vulgare], gi\|168809199\|gb\|ACA2935...	213.0	[0..1]	[173..1]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRDRDPLSV GRVIGDVLDP FTKSISLRVT YSSREVNNGC ELKPSQVANQ PRVDIGGEDL  60
   61 RTFYTLVMVD PDAPSPSDPS LREYLHWLVT DIPATTGASF GHETVCYESP RPTMGIHRFV 120
  121 FVLFRQLGRQ TVYAPGWRQN FNTRDFAEVY NLGSPVAAVY FNCQRESGSG GRRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	1wkpA
Description:	flowering locus t (ft) from arabidopsis thaliana
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits