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View Structure Prediction Details

Protein: gi|46931292, gi|...
Organism: Arabidopsis thaliana
Length: 228 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46931292, gi|....

Description E-value Query
Range
Subject
Range
h0012206 - null
gi|104487297 - gi|104487297|ref|NP_570924.2| protein tyrosine phosphatase, receptor type, sigma isoform 2 precursor...
201.0 [0..15] [225..1405]

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Predicted Domain #1
Region A:
Residues: [1-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDETEEDDT TQQRSSRNDG VSKNKGKGFK GDKAKRALIG AGGRILFYPT LLYNLVRFKL  60
   61 QSQFRWWDQI DEYLLMGAVP FRKDVPRLKK LGVGGVITLN EPYETLVPSS LYSAYEMEHL 120
  121 VIPTRDYLFA PSIVDITLAV NFIHKNALLG KTTYVHCKAG RGRSTTVVLC YLIEHKSMTV 180
  181 AAAFEHVRSI RPRVLLHPSQ RKVVEEFSRL QSPLSESTFI ATSGDIVS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.39794
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle