| Protein: | VAB_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 498 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAB_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
609.0 | [0..1] | [498..1] |
|
|
528.0 | [0..11] | [492..7] |
|
|
439.0 | [0..74] | [489..66] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MERELRRPNP INSSRRPEIF SSGGSSTQLP ESPRGPMEFL SRSWSVSALE VSRALHTAKS 60
61 ASATNRPPSS INTPIPEETL NPEKEECPPE NSTSVSSQFS FAASATSQLV LERIMSQSEV 120
121 SPLTSGRLSH SSG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.221 | a.174.1 | Double Clp-N motif |
| View | Download | 0.221 | a.174.1 | Double Clp-N motif |
| View | Download | 0.221 | d.52.7 | Ribosome-binding factor A, RbfA |
|
Region A: Residues: [134-375] |
1 11 21 31 41 51
| | | | | |
1 PLNGGGSFTE TDSPPISPSD EFDDVIKYFR THNTIHPLFS GTGGSRGTTG NGSNTPMAGT 60
61 GPKTVGRWLK DRKEKKKEET RTQNAQVHAA VSVAAVASAV AAVAAATAAS SPGKNEQMAR 120
121 IDMAMASAAA LVAAQCVEAA EIMGADRDHL TSVVSSAVNV KSHDDIVTLT AAAATALRGA 180
181 ATLKARALKE VWNIAAVLPA EKGASSALCG QVDTKHSDSS FSGELPVAGE DFLGVCNQEL 240
241 LA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [376-498] |
1 11 21 31 41 51
| | | | | |
1 KGTELLKRTR GGELHWKIVS VYINKAGQAV LKMKSKHVGG TFTKKKKHMV LEVRKDIPAW 60
61 AGRDLFNGDK HHYFGLKTET KRVIEFECRN QREYEIWTQG VSRLLAIAAE KKQKSSMSKW 120
121 MAP
|
| Detection Method: | |
| Confidence: | 70.0 |
| Match: | PF08458.1 |
| Description: | No description for PF08458.1 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.696 | N/A | N/A | d.312.1 | Description not found. |
| View | Download | 0.667 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.667 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.646 | N/A | N/A | d.129.3 | Bet v1-like |
| View | Download | 0.638 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.629 | N/A | N/A | b.55.1 | PH domain-like |
| View | Download | 0.593 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.550 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.530 | N/A | N/A | b.42.1 | Cytokine |
| View | Download | 0.498 | N/A | N/A | d.110.4 | SNARE-like |
| View | Download | 0.418 | N/A | N/A | d.110.4 | SNARE-like |
| View | Download | 0.406 | N/A | N/A | d.110.4 | SNARE-like |
| View | Download | 0.400 | N/A | N/A | b.55.1 | PH domain-like |
