YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55670329, gi\|...
Organism:	Rhodococcus sp.
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55670329, gi|....

Description	E-value	Query Range	Subject Range
gi\|1542961 - gi\|1542961\|gb\|AAB08026.1\| isopropylbenzene 2,3-dioxygenase	220.0	[0..1]	[187..1]
gi\|62485021 - gi\|62485021\|dbj\|BAD95524.1\| benzene dioxygenase small subunit [Rhodococcus opacus]	218.0	[0..1]	[187..1]
gi\|4105710, gi\|6... - gi\|62738280\|pdb\|1WQL\|B Chain B, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens Ip01, gi\|4... gi\|1685014 - gi\|1685014\|gb\|AAB36667.1\| isopropylbenzene-2,3-dioxygenase	206.0	[0..2]	[187..1]
BNZB_PSEPU - Benzene 1,2-dioxygenase subunit beta OS=Pseudomonas putida GN=bnzB PE=3 SV=1 BNZB_PSEP1 - Benzene 1,2-dioxygenase subunit beta OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=bnzB PE=1 SV... tr\|I7CA88\|I7CA88... - Benzene 1,2-dioxygenase subunit beta OS=Pseudomonas putida (strain DOT-T1E) GN=todC2 PE=4 SV=1	206.0	[0..1]	[187..1]
gi\|3184045 - gi\|3184045\|emb\|CAA06971.1\| terminal oxygenase small subunit [Ralstonia sp. JS705]	205.0	[0..1]	[187..1]
BPHA2_PSES1 - Biphenyl dioxygenase subunit beta OS=Pseudomonas sp. (strain KKS102) GN=bphA2 PE=3 SV=1 gi\|391834, gi\|10... - gi\|391834\|dbj\|BAA04138.1\| small subunit of biphenyl dioxygenase [Pseudomonas sp. KKS102], pir\|\|JC243...	203.0	[0..4]	[187..10]
gi\|1245153\|gb\|AA... - biphenyl dioxygenase terminal oxygenase beta subunit BPHE_COMTE - Biphenyl dioxygenase subunit beta OS=Comamonas testosteroni GN=bphE PE=1 SV=1	203.0	[0..2]	[187..1]
gi\|2822266 - gi\|2822266\|gb\|AAC03437.1\| isopropylbenzene dioxygenase, iron-sulfur protein, small subunit [Pseudomo...	203.0	[0..2]	[187..1]
gi\|557071, gi\|15... - gi\|557071\|gb\|AAC43633.1\| chlorobenzene dioxygenase, small subunit of terminal oxygenase [Pseudomonas... gi\|163858052 - gi\|163858052\|ref\|YP_001632350.1\| chlorobenzene dioxygenase, small subunit of terminal oxygenase [Bor... gi\|163261780 - gi\|163261780\|emb\|CAP44082.1\| chlorobenzene dioxygenase, small subunit of terminal oxygenase [Bordete...	202.0	[0..1]	[187..1]

Back

Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDAESPTTA FRTKPAPVDP SLQHEIEQFY YWEAKLLNDR RFQEWFDLLA EDIHYFMPIR  60
   61 TTRIMRETAQ EYSGAREYAH FDDNAQMMRG RLRKITSDVS WSENPASRTR HVISNVMIVD 120
  121 GEKPGEYHVS SVFIVYRNRL ERQLDIFAGE RKDILRRTGS EAGFELAKRT ILIDQSTILS 180
  181 NNLSFFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.522879
Match:	1uliB
Description:	Biphenyl dioxygenase (BphA1A2) derived from Rhodococcus sp. strain RHA1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits