YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55670328, gi\|...
Organism:	Rhodococcus sp.
Length:	460 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55670328, gi|....

Description	E-value	Query Range	Subject Range
gi\|1542960, gi\|3... - gi\|33867210\|ref\|NP_898768.1\| IPB-dioxygenase, ISP large subunit (IpbA1) [Rhodococcus erythropolis], ...	399.0	[0..1]	[460..1]
gi\|37999971 - gi\|37999971\|gb\|AAL61663.2\| iron sulfur protein large subunit [Rhodococcus aetherivorans] gi\|226349989 - gi\|226349989\|ref\|YP_002777102.1\| benzene dioxygenase large subunit [Rhodococcus opacus B4] gi\|146262378 - gi\|146262378\|gb\|ABQ15205.1\| iron sulfur protein large subunit [Rhodococcus sp. L4] gi\|37999971 - gi\|37999971\|gb\|AAL61663.2\|AF452376_2 iron sulfur protein large subunit [Rhodococcus aetherivorans] gi\|62485020 - gi\|62485020\|dbj\|BAD95523.1\| benzene dioxygenase large subunit [Rhodococcus opacus B4]	399.0	[0..1]	[460..1]
gi\|61394232 - gi\|61394232\|gb\|AAX45786.1\| terminal dioxygenase large alpha-subunit [Pseudomonas putida]	370.0	[0..1]	[451..1]
BNZA_PSEPU - Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=bnzA PE=3 SV=1 tr\|I7B4T5\|I7B4T5... - Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida (strain DOT-T1E) GN=todC1 PE=4 SV=1 BNZA_PSEP1 - Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=bnzA PE=1 S...	370.0	[0..1]	[451..1]
gi\|2264417 - gi\|2264417\|gb\|AAC46390.1\| TecA1 [Burkholderia sp. PS12] gi\|2264417 - gi\|2264417\|gb\|AAC46390.1\| TecA1 [Burkholderia sp. PS12]	367.0	[0..1]	[451..1]
gi\|3059204 - gi\|3059204\|dbj\|BAA25619.1\| terminal dioxygenase, large subunit [Rhodococcus erythropolis] gi\|607172, gi\|10... - gi\|607172\|emb\|CAA56346.1\| large subunit of the biphenyl dioxygenase [Rhodococcus globerulus], pir\|\|S...	365.0	[0..1]	[456..1]
gi\|557070, gi\|15... - gi\|557070\|gb\|AAC43632.1\| chlorobenzene dioxygenase, large subunit of terminal oxygenase [Pseudomonas...	364.0	[0..1]	[451..1]
gi\|927232 - gi\|927232\|gb\|AAB07750.1\| terminal dioxygenase, large subunit [Rhodococcus sp. M5]	364.0	[0..1]	[456..1]
gi\|3184044 - gi\|3184044\|emb\|CAA06970.1\| terminal oxygenase large subunit [Ralstonia sp. JS705]	362.0	[0..1]	[452..1]

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Predicted Domain #1

Region A:
Residues: [1-460]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDVQCEPAL AGRKPKWADA DIAELVDERT GRLDPRIYTD EALYEQELER IFGRSWLLMG  60
   61 HETQIPKAGD FMTNYMGEDP VMVVRQKNGE IRVFLNQCRH RGMRICRADG GNAKSFTCSY 120
  121 HGWAYDTGGN LVSVPFEEQA FPGLRKEDWG PLQARVETYK GLIFANWDAD APDLDTYLGE 180
  181 AKFYMDHMLD RTEAGTEAIP GIQKWVIPCN WKFAAEQFCS DMYHAGTTSH LSGILAGLPD 240
  241 GVDLSELAPP TEGIQYRATW GGHGSGFYIG DPNLLLAIMG PKVTEYWTQG PAAEKASERL 300
  301 GSTERGQQLM AQHMTIFPTC SFLPGINTIR AWHPRGPNEI EVWAFTVVDA DAPEEMKEEY 360
  361 RQQTLRTFSA GGVFEQDDGE NWVEIQQVLR GHKARSRPFN AEMGLGQTDS DNPDYPGTIS 420
  421 YVYSEEAARG LYTQWVRMMT SPDWAALDAT RPAVSESTHT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	112.0
Match:	1uliA
Description:	Biphenyl dioxygenase (BphA1A2) derived from Rhodococcus sp. strain RHA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.11718133018478	bayes_pls_golite062009
oxidoreductase activity	0.194421372741844	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: