YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|158274246, gi...
Organism:	Chlamydomonas reinhardtii
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|158274246, gi....

Description	E-value	Query Range	Subject Range
gi\|42550877, gi\|... - gi\|46138745\|ref\|XP_391063.1\| hypothetical protein FG10887.1 [Gibberella zeae PH-1], gi\|42550877\|gb\|E...	157.0	[0..1]	[129..115]
gi\|11279039 - pir\|\|H81089 HesB/YadR/YfhF family protein NMB1381 [imported] - Neisseria meningitidis (strain MC58 s... gi\|15677244, gi\|... - gi\|7226622\|gb\|AAF41749.1\| HesB/YadR/YfhF family protein [Neisseria meningitidis MC58], gi\|15677244\|r...	156.0	[0..5]	[129..1]
gi\|90306487, gi\|... - gi\|90306487\|gb\|EAS36118.1\| hypothetical protein CIMG_01472 [Coccidioides immitis RS], gi\|119194195\|r...	155.0	[0..10]	[129..130]
ERPA_BORA1 - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella avium (strain 197N) GN=erpA PE=3 S...	155.0	[0..9]	[129..1]
ERPA_POLSQ - Putative iron-sulfur cluster insertion protein ErpA OS=Polynucleobacter necessarius subsp. asymbioti...	154.0	[0..8]	[128..1]
gi\|68530175, gi\|... - gi\|94309972\|ref\|YP_583182.1\| iron-sulfur cluster assembly protein IscA [Ralstonia metallidurans CH34...	154.0	[0..19]	[129..2]
gi\|73540762, gi\|... - gi\|73540762\|ref\|YP_295282.1\| HesB/YadR/YfhF:Iron-sulphur cluster assembly protein IscA [Ralstonia eu...	154.0	[0..25]	[129..1]
tr\|D8NW15\|D8NW15... - Fe-S cluster assembly and activation factor OS=Ralstonia solanacearum GN=iscA PE=4 SV=1 gi\|206595031, gi... - gi\|207743632\|ref\|YP_002260024.1\| hypothetical protein RSIPO_01815 [Ralstonia solanacearum IPO1609], ... gi\|207725257, gi... - gi\|207725257\|ref\|YP_002255653.1\| hypothetical protein RSMK00197 [Ralstonia solanacearum MolK2], gi\|2... gi\|83748485, gi\|... - gi\|83748485\|ref\|ZP_00945507.1\| HesB protein family [Ralstonia solanacearum UW551], gi\|83724896\|gb\|EA...	154.0	[0..25]	[129..1]
gi\|17428034 - gi\|17428034\|emb\|CAD14723.1\| conserved hypothetical protein [Ralstonia solanacearum GMI1000] gi\|17545740 - gi\|17545740\|ref\|NP_519142.1\| hypothetical protein RSc1021 [Ralstonia solanacearum GMI1000]	154.0	[0..25]	[129..1]
gi\|37197683, gi\|... - gi\|37678941\|ref\|NP_933550.1\| hypothetical protein VV0757 [Vibrio vulnificus YJ016], gi\|37197683\|dbj\|...	153.0	[0..25]	[129..2]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSTLGLLAE ALKETARSPR MRKAAVELTE AAAGRIKELL NKRHKEYLKL GVKTRGCSGM  60
   61 SYTLNYADNK GKFDEVVEDK GVRIIIEPQA LMHVLGTKMD YVKDDLRQEF VFVNPNAKGT 120
  121 CGCGESFTT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.30103
Match:	2d2aA
Description:	Crystal Structure of Escherichia coli SufA Involved in Biosynthesis of Iron-sulfur Clusters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits