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View Structure Prediction Details

Protein: gi|9955183, gi|9...
Organism: Homo sapiens
Length: 222 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9955183, gi|9....

Description E-value Query
Range
Subject
Range
gi|82697053 - gi|82697053|gb|AAI08386.1| Igk-V21-4 protein [Mus musculus]
172.0 [0..6] [219..16]
gi|32454257 - gi|32454257|gb|AAP82927.1| Fab4LC [Cloning vector pCOMB3H]
168.0 [0..13] [217..25]

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Predicted Domain #1
Region A:
Residues: [1-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADPCDSNPRG VSAYLSRPSP FDLFIRKSPT ITCLVVDLAP SKGTVNLTWS RASGKPVNHS  60
   61 TRKEEKQRNG TLTVTSTLPV GTRDWIEGET YQCRVTHPHL PRALMRSTTK TSGPRAAPEV 120
  121 YAFATPEWPG SRDKRTLACL IQNFMPEDIS VQWLHNEVQL PDARHSTTQP RKTKGSGFFV 180
  181 FSRLEVTRAE WEQKDEFICR AVHEAASPSQ TVQRAVSVNP GK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.30103
Match: 1f6aB
Description: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon; Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle