YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|96554, gi\|227578
Organism:	Klebsiella oxytoca
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|96554, gi|227578.

Description	E-value	Query Range	Subject Range
gi\|196158756, gi... - gi\|88792991\|ref\|ZP_01108708.1\| general secretion pathway protein I [Alteromonas macleodii 'Deep ecot...	107.0	[0..2]	[121..36]
gi\|71144971, gi\|... - gi\|71279231\|ref\|YP_271233.1\| general secretion pathway protein I [Colwellia psychrerythraea 34H], gi...	106.0	[0..3]	[120..7]
gi\|68545426, gi\|... - gi\|68545426\|ref\|ZP_00584977.1\| General secretion pathway protein I [Shewanella amazonensis SB2B], gi...	106.0	[0..3]	[120..14]
gi\|91791495, gi\|... - gi\|91791495\|ref\|YP_561146.1\| general secretion pathway protein I [Shewanella denitrificans OS217], g...	104.0	[0..1]	[120..1]
gi\|34499264, gi\|... - gi\|34499264\|ref\|NP_903479.1\| general secretion pathway protein I [Chromobacterium violaceum ATCC 124...	103.0	[0..1]	[120..1]
gi\|114332591, gi... - gi\|69951918\|ref\|ZP_00639530.1\| General secretion pathway protein I [Shewanella frigidimarina NCIMB 4...	103.0	[0..3]	[120..26]
gi\|68520952, gi\|... - gi\|68541299\|ref\|ZP_00581044.1\| General secretion pathway protein I [Shewanella baltica OS155], gi\|68...	103.0	[0..1]	[120..1]
gi\|160873284, gi... - gi\|160873284\|ref\|YP_001552600.1\| general secretion pathway protein I [Shewanella baltica OS195], gi\|...	103.0	[0..1]	[120..1]
gi\|78689148, gi\|... - gi\|78689148\|ref\|ZP_00853813.1\| General secretion pathway protein I [Shewanella sp. MR-7], gi\|7851154... gi\|82495886, gi\|... - gi\|82495886\|ref\|ZP_00881459.1\| General secretion pathway protein I [Shewanella sp. MR-4], gi\|8240619...	102.0	[0..1]	[120..1]
gi\|117610946, gi... - gi\|78685481\|ref\|ZP_00850259.1\| General secretion pathway protein I [Shewanella sp. ANA-3], gi\|785068...	102.0	[0..1]	[120..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKQSGMTLI EVMVALVVFA LAGLAVMQAT LQQTRQLGRM EEKTLASWLA DNQLVQLRLE  60
   61 NRWPALSWSE TTLQAAGVSW HIRWQGVETD LPQLRALDVE VRHAKSDKTP VSSLRTYVTS 120
  121 P

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Detection Method:	PSI-BLAST
Confidence:	15.39794
Match:	1ay2A
Description:	STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits