YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227576, gi\|96552
Organism:	Klebsiella oxytoca
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227576, gi|96552.

Description	E-value	Query Range	Subject Range
GSPG_ERWCA - (P31586) General secretion pathway protein G precursor (Pectic enzymes secretion protein outG) GSPG_PECCC - Type II secretion system protein G OS=Pectobacterium carotovorum subsp. carotovorum GN=outG PE=3 SV=...	175.0	[0..3]	[140..19]
gi\|78701109, gi\|... - gi\|78701109\|ref\|ZP_00865562.1\| General secretion pathway protein G [Alkalilimnicola ehrlichei MLHE-1...	172.0	[0..2]	[138..5]
gi\|49612555, gi\|... - gi\|50122029\|ref\|YP_051196.1\| general secretion pathway protein G [Pectobacterium atrosepticum SCRI10...	172.0	[0..3]	[140..9]
gi\|126639839, gi... - gi\|78366001\|ref\|ZP_00836284.1\| General secretion pathway protein G [Shewanella sp. PV-4], gi\|7836190...	169.0	[0..2]	[139..5]
gi\|48781360, gi\|... - gi\|91785781\|ref\|YP_560987.1\| general secretion pathway protein G [Burkholderia xenovorans LB400], gi...	168.0	[0..2]	[136..17]
gi\|119943893, gi... - gi\|119943893\|ref\|YP_941573.1\| general secretion pathway protein G [Psychromonas ingrahamii 37], gi\|1...	168.0	[0..1]	[140..1]
gi\|114332589, gi... - gi\|69951920\|ref\|ZP_00639532.1\| General secretion pathway protein G [Shewanella frigidimarina NCIMB 4...	168.0	[0..2]	[139..5]
gi\|117918612, gi... - gi\|78685479\|ref\|ZP_00850257.1\| General secretion pathway protein G [Shewanella sp. ANA-3], gi\|785068...	168.0	[0..2]	[138..5]
GSPG_AERHY - Type II secretion system protein G OS=Aeromonas hydrophila GN=exeG PE=3 SV=1	168.0	[0..2]	[139..4]
gi\|82406189, gi\|... - gi\|82495884\|ref\|ZP_00881457.1\| General secretion pathway protein G [Shewanella sp. MR-4], gi\|8240618... gi\|113887109, gi... - gi\|78689146\|ref\|ZP_00853811.1\| General secretion pathway protein G [Shewanella sp. MR-7], gi\|7851154...	168.0	[0..2]	[138..5]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRQRGFTLL EIMVVIVILG VLASLVVPNL MGNKEKADRQ KVVSDLVALE GALDMYKLDN  60
   61 SRYPTTEQGL QALVSAPSAE PHARNYPEGG YIRRLPQDPW GSDYQLLSPG QHGQVDIFSL 120
  121 GPDGVPESND DIGNWTIGKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1t92A
Description:	Crystal structure of N-terminal truncated pseudopilin PulG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits