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View Structure Prediction Details

Protein: gi|222628891
Organism: Oryza sativa Japonica Group
Length: 327 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|222628891.

Description E-value Query
Range
Subject
Range
gi|113564394, gi... - gi|115458446|ref|NP_001052823.1| Os04g0431200 [Oryza sativa (japonica cultivar-group)], gi|113564394...
351.0 [0..1] [327..1]

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Predicted Domain #1
Region A:
Residues: [1-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSDVSVDV RPEFNSFDHL RSIRYIATDR PWLTLYGIRV QPVTPFSSLS SRPDLALIHQ  60
   61 CLPDELLFEI FARMSPYSLG RAACVCRKWK YTVRNPTLWR NACLKTWQRT GMEANYQMVQ 120
  121 SLYDSSWRKM WMLRPRIQFD GLYVSRNTYI HTGTAEWQFT KTVNVVCYYR YLRFFPSGKF 180
  181 LYKISPQKIK DVVKCM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.045757
Match: 2ovpB
Description: No description for 2ovpB was found.

Predicted Domain #2
Region A:
Residues: [197-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HFRASKGDCV FKGDYVLSED GQIELALLYP GRRYTLVRMR LRLRGTTLGA NNRLDVLKIL  60
   61 TTGVNATELR NWKGSVLELV ETWDEDETHD PEVPAVTHSR GLTPFVFVPF EEADTSVMNL 120
  121 PVEKMDYFVP G

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle