YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47169456, gi\|...
Organism:	Thermotoga maritima
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47169456, gi|....

Description	E-value	Query Range	Subject Range
gi\|33866398, gi\|... - gi\|33866398\|ref\|NP_897957.1\| hypothetical protein SYNW1866 [Synechococcus sp. WH 8102], gi\|33633176\|...	187.0	[0..15]	[163..3]
gi\|21219886, gi\|... - gi\|7649593\|emb\|CAB88878.1\| conserved hypothetical protein [Streptomyces coelicolor A3(2)], gi\|212198...	186.0	[0..15]	[164..3]
gi\|78196612, gi\|... - gi\|78212153\|ref\|YP_380932.1\| hypothetical protein Syncc9605_0603 [Synechococcus sp. CC9605], gi\|7819...	186.0	[0..15]	[163..3]
gi\|116068791, gi... - gi\|116073486\|ref\|ZP_01470748.1\| hypothetical protein RS9916_33587 [Synechococcus sp. RS9916], gi\|116...	185.0	[0..16]	[164..1]
gi\|81299880, gi\|... - gi\|81299880\|ref\|YP_400088.1\| hypothetical protein Synpcc7942_1071 [Synechococcus elongatus PCC 7942]...	184.0	[0..15]	[163..25]
gi\|29610648, gi\|... - gi\|29833525\|ref\|NP_828159.1\| hypothetical protein SAV_6983 [Streptomyces avermitilis MA-4680], gi\|29... gi\|239986314 - gi\|239986314\|ref\|ZP_04706978.1\| hypothetical protein SrosN1_03302 [Streptomyces roseosporus NRRL 113... gi\|239939828 - gi\|239939828\|ref\|ZP_04691765.1\| hypothetical protein SrosN15_02425 [Streptomyces roseosporus NRRL 15...	184.0	[0..15]	[164..3]
gi\|22299584, gi\|... - gi\|22299584\|ref\|NP_682831.1\| hypothetical protein tlr2041 [Thermosynechococcus elongatus BP-1], gi\|2...	184.0	[0..15]	[163..5]
gi\|87123729, gi\|... - gi\|87123729\|ref\|ZP_01079579.1\| hypothetical protein RS9917_08976 [Synechococcus sp. RS9917], gi\|8616...	184.0	[0..16]	[164..1]
gi\|87303044, gi\|... - gi\|87303044\|ref\|ZP_01085848.1\| hypothetical protein WH5701_07716 [Synechococcus sp. WH 5701], gi\|872...	183.0	[0..15]	[164..3]
gi\|116072794, gi... - gi\|116072794\|ref\|ZP_01470060.1\| hypothetical protein BL107_09786 [Synechococcus sp. BL107], gi\|11606...	183.0	[0..15]	[163..3]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSDKIHHHH HHXRKAWVKT LALDRVSNTP VVILGIEGTN RVLPIWIGAC EGHALALAXE  60
   61 KXEFPRPLTH DLLLSVLESL EARVDKVIIH SLKDNTFYAT LVIRDLTYTD EEDEEAALID 120
  121 IDSRPSDAII LAVKTGAPIF VSDNLVEKHS IELEVNERDL INSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.30103
Match:	1sj5A
Description:	CRYSTAL STRUCTURE OF C38A MUTANT OF HYPOTHETICAL PROTEIN (TM0160) FROM THERMOTOGA MARITIMA AT 2.8 A RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits