YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34810646
Organism:	Thermotoga maritima
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34810646.

Description	E-value	Query Range	Subject Range
gi\|71914982, gi\|... - gi\|72161250\|ref\|YP_288907.1\| CBS domain-containing protein [Thermobifida fusca YX], gi\|71914982\|gb\|A... gi\|48836601 - ref\|ZP_00293597.1\| COG1253: Hemolysins and related proteins containing CBS domains [Thermobifida fus...	131.0	[0..2]	[157..189]
gi\|75701835, gi\|... - gi\|75908110\|ref\|YP_322406.1\| signal transduction protein [Anabaena variabilis ATCC 29413], gi\|757018...	130.0	[0..16]	[152..3]
gi\|25303293 - pir\|\|AF2282 hypothetical protein alr3813 [imported] - Nostoc sp. (strain PCC 7120) gi\|17132947, gi\|... - gi\|17231305\|ref\|NP_487853.1\| hypothetical protein alr3813 [Nostoc sp. PCC 7120], gi\|17132947\|dbj\|BAB...	129.0	[0..16]	[152..3]
gi\|22299345, gi\|... - gi\|22299345\|ref\|NP_682592.1\| CBS domain-containing protein [Thermosynechococcus elongatus BP-1], gi\|...	129.0	[0..18]	[151..5]
gi\|71674188, gi\|... - gi\|71674188\|ref\|ZP_00671935.1\| CBS [Trichodesmium erythraeum IMS101], gi\|71672243\|gb\|EAO28906.1\| CBS...	129.0	[0..13]	[154..1]
gi\|46196313, gi\|... - gi\|46198690\|ref\|YP_004357.1\| hemolysin-like protein [Thermus thermophilus HB27], gi\|46196313\|gb\|AAS8...	126.0	[0..3]	[157..209]
gi\|55980703, gi\|... - gi\|55980703\|ref\|YP_144000.1\| hemolysin-related protein [Thermus thermophilus HB8], gi\|55772116\|dbj\|B...	126.0	[0..3]	[157..208]
gi\|53796446 - ref\|ZP_00357413.1\| COG0516: IMP dehydrogenase/GMP reductase [Chloroflexus aurantiacus] gi\|163667490, gi... - gi\|76259769\|ref\|ZP_00767414.1\| IMP dehydrogenase [Chloroflexus aurantiacus J-10-fl], gi\|76165345\|gb\|... gi\|222523951, gi... - gi\|222523951\|ref\|YP_002568421.1\| inosine-5'-monophosphate dehydrogenase [Chloroflexus sp. Y-400-fl],...	124.0	[0..14]	[151..90]
gi\|88930791, gi\|... - gi\|88930791\|ref\|ZP_01136486.1\| CBS [Acidothermus cellulolyticus 11B], gi\|88913261\|gb\|EAR32696.1\| CBS...	123.0	[0..2]	[157..185]
gi\|89210870, gi\|... - gi\|89210870\|ref\|ZP_01189253.1\| CBS:Protein of unknown function DUF21:Transporter-associated region [...	122.0	[0..2]	[157..181]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSDKIHHHH HHMKVKDVCK LISLKPTVVE EDTPIEEIVD RILEDPVTRT VYVARDNKLV  60
   61 GMIPVMHLLK VSGFHFFGFI PKEELIRSSM KRLIAKNASE IMLDPVYVHM DTPLEEALKL 120
  121 MIDNNIQEMP VVDEKGEIVG DLNSLEILLA LWKGREK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.045757
Match:	1o50A
Description:	Crystal structure of CBS domain-containing predicted protein (TM0935) from Thermotoga maritima at 1.87 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits