YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21730736
Organism:	Aquifex aeolicus
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21730736.

Description	E-value	Query Range	Subject Range
Y2326_GEODF - Probable transcriptional regulatory protein Geob_2326 OS=Geobacter daltonii (strain DSM 22248 / JCM ...	381.0	[0..2]	[248..2]
Y743_GEOMG - Probable transcriptional regulatory protein Gmet_0743 OS=Geobacter metallireducens (strain GS-15 / A...	380.0	[0..2]	[248..2]
YA74_GEOSL, Y107... - (P62036) Hypothetical UPF0082 protein GSU1074, UPF0082 protein GSU1074 OS=Geobacter sulfurreducens G... Y1074_GEOSL - Probable transcriptional regulatory protein GSU1074 OS=Geobacter sulfurreducens (strain ATCC 51573 /...	376.0	[0..2]	[248..2]
gi\|84703574, gi\|... - gi\|84703574\|ref\|ZP_01017402.1\| hypothetical protein PB2503_07719 [Parvularcula bermudensis HTCC2503]...	375.0	[0..2]	[249..2]
Y1575_AQUAE - Probable transcriptional regulatory protein aq_1575 OS=Aquifex aeolicus (strain VF5) GN=aq_1575 PE=1... YF75_AQUAE, Y157... - (O67517) Hypothetical UPF0082 protein AQ_1575, UPF0082 protein aq_1575 OS=Aquifex aeolicus GN=aq_157...	375.0	[0..2]	[249..2]
Y479_MAGMM - Probable transcriptional regulatory protein Mmc1_0479 OS=Magnetococcus marinus (strain ATCC BAA-1437...	372.0	[0..2]	[248..2]
gi\|114762980, gi... - gi\|114762980\|ref\|ZP_01442410.1\| hypothetical protein R2601_20911 [Roseovarius sp. HTCC2601], gi\|1145...	371.0	[0..2]	[248..2]
Y1072_RUEPO - Probable transcriptional regulatory protein SPO1072 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 1... Y1072_SILPO - UPF0082 protein SPO1072 OS=Silicibacter pomeroyi GN=SPO1072 PE=3 SV=1	370.0	[0..2]	[248..2]
gi\|17982216, gi\|... - gi\|17986604\|ref\|NP_539238.1\| hypothetical protein BMEI0321 [Brucella melitensis 16M], gi\|17982216\|gb... gi\|25318120 - gi\|25318120\|pir\|\|AC3292 glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) [imported] - Brucella ...	369.0	[0..2]	[248..9]
Y1220_METCA - UPF0082 protein MCA1220 OS=Methylococcus capsulatus GN=MCA1220 PE=3 SV=1 Y1220_METCA - Probable transcriptional regulatory protein MCA1220 OS=Methylococcus capsulatus (strain ATCC 33009 /...	368.0	[0..2]	[249..2]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XAGHSHWAQI KHKKAKVDAQ RGKLFSKLIR EIIVATRLGG PNPEFNPRLR TAIEQAKKAN  60
   61 XPWENIERAI KKGAGELEGE QFEEVIYEGY APGGVAVXVL ATTDNRNRTT SEVRHVFTKH 120
  121 GGNLGASGCV SYLFERKGYI EVPAKEVSEE ELLEKAIEVG AEDVQPGEEV HIIYTVPEEL 180
  181 YEVKENLEKL GVPIEKAQIT WKPISTVQIN DEETAQKVIK LLNALEELDD VQQVIANFEI 240
  241 PEEILQKVG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	1lfpA
Description:	Hypothetical protein aq1575
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits