YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3114286, gi\|2...
Organism:	Saccharomyces cerevisiae
Length:	241 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3114286, gi|2....

Description	E-value	Query Range	Subject Range
gi\|50304213, gi\|... - gi\|50304213\|ref\|XP_452056.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641188\|emb\|CAH0244... gi\|49641188 - gi\|49641188\|emb\|CAH02449.1\| KLLA0B11836p [Kluyveromyces lactis]	239.0	[0..1]	[240..3]
gi\|11514008, gi\|... - gi\|11514008\|pdb\|1G0U\|Q Chain Q, A Gated Channel Into The Proteasome Core Particle, gi\|11513994\|pdb\|1...	236.0	[0..1]	[241..3]
gi\|44980444 - gi\|44980444\|gb\|AAS50377.1\| AAR012Cp [Ashbya gossypii ATCC 10895] gi\|45184835, gi\|... - gi\|45184835\|ref\|NP_982553.1\| AAR012Cp [Ashbya gossypii ATCC 10895], gi\|44980444\|gb\|AAS50377.1\| AAR01...	231.0	[0..1]	[241..3]
PSA7_SOLLC - Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1	230.0	[0..2]	[231..4]
PSA7_CICAR - Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1	229.0	[0..2]	[231..4]
gi\|82621184 - gi\|82621184\|gb\|ABB86280.1\| proteasome-like protein alpha subunit-like [Solanum tuberosum]	229.0	[0..2]	[231..4]
PSA_PYRAB - Proteasome subunit alpha OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=psmA PE=3 SV=1 PSMA_PYRAB - Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1	229.0	[0..1]	[231..9]
PSA_PYRFU - Proteasome subunit alpha OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=p... PSMA_PYRFU - Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1	229.0	[0..1]	[231..9]
PSA_PYRHO - Proteasome subunit alpha OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC ... PSMA_PYRHO - Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1	228.0	[0..1]	[232..9]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYDRALSIFS PDGHIFQVEY ALEAVKRGTC AVGVKGKNCV VLGCERRSTL KLQDTRITPS  60
   61 KVSKIDSHVV LSFSGLNADS RILIEKARVE AQSHRLTLED PVTVEYLTRY VAGVQQRYTQ 120
  121 SGGVRPFGVS TLIAGFDPRD DEPKLYQTEP SGIYSSWSAQ TIGRNSKTVR EFLEKNYDRK 180
  181 EPPATVEECV KLTVRSLLEV VQTGAKNIEI TVVKPDSDIV ALSSEEINQY VTQIEQEKQE 240
  241 Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.522879
Match:	1g65C
Description:	Proteasome alpha subunit (non-catalytic)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits