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View Structure Prediction Details

Protein: gi|218185284
Organism: Oryza sativa Indica Group
Length: 643 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218185284.

Description E-value Query
Range
Subject
Range
gi|115487450, gi... - gi|77553727|gb|ABA96523.1| retrotransposon protein, putative, unclassified, expressed [Oryza sativa ...
687.0 [0..3] [629..1]

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Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVAAAARPQ TAEALSKRAS MLRDSLQRSQ GNTDGMVTIL GSFDHRLSAL EAAMRPTQVR  60
   61 THAIRMAHEN I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [72-643]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKTIKAADGI LSQFDLARRA EAAVLKGPHE DLESYLEAVD LLKGIVRFFS TNKNFKSSEG  60
   61 VLNHVNNLLA KSALKIEEEF RQLMTTYSKP IEPDRLFDCL PKSLRPTKDD PDADPGNAGH 120
  121 SEHPSKSLET AVYRTPTLIP PRILPLMNDI AQQLIQAGNQ QSCYKIYRDT RGSALESSLR 180
  181 KLGVEKLSKE DVQKMQWEAL EAKIGNWIHF MRIAVKLLLA GERKICDQIF DGVNFNKDQC 240
  241 FAELTANSVV TLLSFGDAVA KSKRSPEKLF VLLDMYEVMH ELQPEIEVIF EGKSCSEMRE 300
  301 ASLGLAKRLA QTAQETFADF EEAVEKDASK TIVNDGTVHP LTSYVINYVK FLFDYQSTLK 360
  361 LLFQEFETGS ETESQLAVVT MRIMQALQNN LDGKSKQYRD PALTYLFLMN NIHYMVRSVR 420
  421 RSEAKDILGD DWIQRHRRIV QQNANQYKRV AWAKILQTLS IQGAGSTGSS DLSSSGVSRA 480
  481 MIKERFKSFN MQFEELHAKQ SQWIVPDQEL RESLRLAVAE VLLPAYRSFV KRFGNLVENG 540
  541 KNPHKYVRYS PEMVEQLLGE FFEGQQWGEQ KR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 119.0
Match: 2pftA
Description: No description for 2pftA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle