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View Structure Prediction Details

Protein: gi|218192120
Organism: Oryza sativa Indica Group
Length: 418 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218192120.

Description E-value Query
Range
Subject
Range
MCAC1_ARATH - Protein MID1-COMPLEMENTING ACTIVITY 1 OS=Arabidopsis thaliana GN=MCA1 PE=1 SV=1
276.0 [0..3] [418..4]

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Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASWENLGDV ATVVQLTGLD AVRLISMIVK AASTARLHKR NCRRFAQHLK LIGGLLEQLR  60
   61 VSELKKYPET REPLEQLEDA LRRA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [85-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLLVHSCQDR SYLYLLAMGW NIVYQFRKAQ NEIDNYLRLV PLITLVDNAR VRERMEYIER  60
   61 DQCEYSFDDE DKEVQDALLN PDPSTNPTVV LKKTLSCSYP NLPFNEALRK ESEKLQVELQ 120
  121 RSQSNMDMGQ CEVIQHLLGV TKTVASSIPE KCATPKVSEK ADSNHTKVSE DSAKTYHDDS 180
  181 PKKQKDACTA PRSSPPSSYG HDLVSSRGSY SDEWHADLLG CCS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1omwA
Description: G-protein coupled receptor kinase 2, N-terminal domain; G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1); G-protein coupled receptor kinase 2
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [308-418]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPSLCLRTFF FPCGTFSKIA SIAKNRPMSS SEACNDIMAY SLILSCCCYT CCVRRKLRQK  60
   61 LNIAGGCIDD FLSHLMCCCC ALVQEWREVE IRGAYGERTK ISPPSFQYME H

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle