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View Structure Prediction Details

Protein: gi|52696230, gi|...
Organism: Mus musculus
Length: 350 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52696230, gi|....

Description E-value Query
Range
Subject
Range
gi|62738483, gi|... - gi|62738483|pdb|1XML|A Chain A, Structure Of Human Dcps, gi|62738482|pdb|1XML|B Chain B, Structure O...
443.0 [0..13] [348..6]
DCPS_MOUSE - m7GpppX diphosphatase OS=Mus musculus GN=Dcps PE=1 SV=1
442.0 [0..13] [350..1]
DCPS_PIG - m7GpppX diphosphatase OS=Sus scrofa GN=DCPS PE=2 SV=1
439.0 [0..13] [348..1]
DCPS_RAT - m7GpppX diphosphatase OS=Rattus norvegicus GN=Dcps PE=2 SV=1
439.0 [0..13] [337..1]

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Predicted Domain #1
Region A:
Residues: [1-350]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSDKIHHHH HHMADTAPQL KRKREQEAEE AETPSTEEKE AGVGNGTSAP VRLPFSGFRV  60
   61 QKVLRESARD KIIFLHGKVN EDSGDTHGED AVVILEKTPF QVEHVAQLLT GSPELKLQFS 120
  121 NDIYSTYNLF PPRHLSDIKT TVVYPATEKH LQKYMRQDLR LIRETGDDYR TITLPYLESQ 180
  181 SLSIQWVYNI LDKKAEADRI VFENPDPSDG FVLIPDLKWN QQQLDDLYLI AICHRRGIRS 240
  241 LRDLTPEHLP LLRNILREGQ EAILKRYQVT GDRLRVYLHY LPSYYHLHVH FTALGFEAPG 300
  301 SGVERAHLLA QVIENLECDP KHYQQRTLTF ALRTDDPLLQ LLQKAQQERN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 127.0
Match: 1vlrA
Description: Crystal structure of mRNA decapping enzyme (DcpS) from Mus musculus at 1.83 A resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle