YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|52696040
Organism:	Homo sapiens
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52696040.

Description	E-value	Query Range	Subject Range
LIRA6_PANTR - Leukocyte immunoglobulin-like receptor subfamily A member 6 OS=Pan troglodytes GN=LILRA6 PE=2 SV=1	193.0	[0..1]	[198..24]
gi\|5729927, gi\|2... - gi\|5729927\|ref\|NP_006660.1\| leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM do... gi\|123982830, gi... - gi\|123997511\|gb\|ABM86357.1\| leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM do...	191.0	[0..1]	[198..24]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHLPKPTLWA EPGSVITQGS PVTLRCQGGQ ETQEYRLYRE KKTAPWITRI PQELVKKGQF  60
   61 PIPSITWEHT GRYRCYYGSD TAGRSESSDP LELVVTGAYI KPTLSAQPSP VVNSGGNVTL 120
  121 QCDSQVAFDG FILCKEGEDE HPQCLNSQPH ARGSSRAIFS VGPVSPSRRW WYRCYAYDSN 180
  181 SPYEWSLPSD LLELLVLG

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Detection Method:	PSI-BLAST
Confidence:	47.09691
Match:	1ugnA
Description:	Crystal structure of LIR1.02, one of the alleles of LIR1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.483195558859675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: