YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|52696034, gi\|...
Organism:	Escherichia coli
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52696034, gi|....

Description	E-value	Query Range	Subject Range
gi\|91788290, gi\|... - gi\|91788290\|ref\|YP_549242.1\| NusA antitermination factor [Polaromonas sp. JS666], gi\|91697515\|gb\|ABE...	104.0	[0..2]	[70..355]
gi\|50119658, gi\|... - gi\|50119658\|ref\|YP_048825.1\| transcription elongation factor NusA [Pectobacterium atrosepticum SCRI1...	103.0	[0..1]	[70..365]
gi\|89345654, gi\|... - gi\|89900917\|ref\|YP_523388.1\| NusA antitermination factor [Rhodoferax ferrireducens T118], gi\|8934565...	103.0	[0..2]	[70..355]
gi\|120590502, gi... - gi\|120612038\|ref\|YP_971716.1\| NusA antitermination factor [Acidovorax avenae subsp. citrulli AAC00-1...	103.0	[0..2]	[70..355]
gi\|84695274, gi\|... - gi\|84712758\|ref\|ZP_01020638.1\| Transcription termination factor NusA:Transcription termination facto...	102.0	[0..2]	[70..355]
gi\|85058354, gi\|... - gi\|85058354\|ref\|YP_454056.1\| transcription elongation factor NusA [Sodalis glossinidius str. 'morsit...	102.0	[0..1]	[70..352]
gi\|121554342, gi... - gi\|121609702\|ref\|YP_997509.1\| NusA antitermination factor [Verminephrobacter eiseniae EF01-2], gi\|12...	102.0	[0..1]	[70..354]
gi\|17428302 - gi\|17428302\|emb\|CAD14990.1\| probable n utilization substance transcription regulator protein [Ralsto... gi\|17546007 - gi\|17546007\|ref\|NP_519409.1\| transcription elongation factor NusA [Ralstonia solanacearum GMI1000]	101.0	[0..1]	[70..354]
gi\|90022354, gi\|... - gi\|90022354\|ref\|YP_528181.1\| transcription elongation factor NusA [Saccharophagus degradans 2-40], g...	100.0	[0..1]	[69..354]
gi\|110287236, gi... - gi\|69278569\|ref\|ZP_00613675.1\| Transcription termination factor NusA:Transcription termination facto...	100.0	[0..3]	[70..358]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AHAAIDTFTK YLDIDEDFAT VLVEEGFSTL EELAYVPMKE LLEIEGLDEP TVEALRERAK  60
   61 NALATIAQAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.39794
Match:	1u9lA
Description:	Structural basis for a NusA- protein N interaction
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits