YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|52695645, gi\|...
Organism:	Homo sapiens
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52695645, gi|....

Description	E-value	Query Range	Subject Range
gi\|37528342, gi\|... - gi\|37528342\|ref\|NP_931687.1\| inducible ATP-independent RNA helicase [Photorhabdus luminescens subsp....	241.0	[0..10]	[220..8]
gi\|33238072, gi\|... - gi\|33240544\|ref\|NP_875486.1\| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp. marinus...	241.0	[0..7]	[220..44]
gi\|113950960, gi... - gi\|160874026\|ref\|YP_001553342.1\| DEAD/DEAH box helicase domain-containing protein [Shewanella baltic...	240.0	[0..13]	[220..11]
gi\|68543265, gi\|... - gi\|68543265\|ref\|ZP_00582976.1\| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Shewanella b...	240.0	[0..13]	[220..11]
gi\|146294196, gi... - gi\|77814042\|ref\|ZP_00813311.1\| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Shewanella p...	240.0	[0..13]	[220..11]
gi\|82719006, gi\|... - gi\|82743623\|ref\|ZP_00906258.1\| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Shewanella s...	240.0	[0..13]	[220..11]
gi\|71283289, gi\|... - gi\|71481809\|ref\|ZP_00661512.1\| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-term...	240.0	[0..6]	[220..2]
gi\|66522071 - gi\|66522071\|ref\|XP_624210.1\| PREDICTED: similar to CG6418-PB [Apis mellifera]	239.0	[0..1]	[218..242]
gi\|93355370, gi\|... - gi\|94311518\|ref\|YP_584728.1\| DEAD/DEAH box helicase-like protein [Ralstonia metallidurans CH34], gi\|...	239.0	[0..9]	[220..68]
DBP2_SCHPO - ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dbp2 PE=2 ... dbp2 - ATP-dependent RNA helicase Dbp2	239.0	[0..2]	[220..110]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSDVKGSYVS IHSSGFRDFL LKPELLRAIV DCGFEHPSEV QHECIPQAIL GMDVLCQAKS  60
   61 GMGKTAVFVL ATLQQLEPVT GQVSVLVMCH TRELAFQISK EYERFSKYMP NVKVAVFFGG 120
  121 LSIKKDEEVL KKNCPHIVVG TPGRILALAR NKSLNLKHIK HFILDECDKM LEQLDMRRDV 180
  181 QEIFRMTPHE KQVMMFSATL SKEIRPVCRK FMQDPMEIFV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.0
Match:	1t6nA
Description:	Crystal structure of the N-terminal domain of human UAP56
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.470983068319171	bayes_pls_golite062009
hydrolase activity	0.0582794297634999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: