YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254839439, gi...
Organism:	Homo sapiens
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254839439, gi....

Description	E-value	Query Range	Subject Range
gi\|60826835 - gi\|60826835\|gb\|AAX36773.1\| heme oxygenase 1 [synthetic construct]	281.0	[0..1]	[233..1]
HGNC:5013\|MIM:14... - oxygenase (decycling) 1 HMOX1 - heme oxygenase (decycling) 1 gi\|114686120 - gi\|114686120\|ref\|XP_525579.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] gi\|61357300, gi\|... - gi\|61357300\|gb\|AAX41367.1\| heme oxygenase 1 [synthetic construct], gi\|109451924\|emb\|CAK54833.1\| HMOX...	281.0	[0..1]	[233..1]
gi\|55731206 - gi\|55731206\|emb\|CAH92317.1\| hypothetical protein [Pongo abelii] HMOX1_PONAB - Heme oxygenase 1 OS=Pongo abelii GN=HMOX1 PE=2 SV=1	280.0	[0..1]	[233..1]
gi\|114686122 - gi\|114686122\|ref\|XP_001155421.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]	279.0	[0..1]	[233..1]
HMOX1_PIG - Heme oxygenase 1 OS=Sus scrofa GN=HMOX1 PE=2 SV=1 gi\|481051 - pir\|\|S37687 heme oxygenase (decyclizing) (EC 1.14.99.3) - pig	279.0	[0..1]	[233..1]
HMOX1_MOUSE - Heme oxygenase 1 OS=Mus musculus GN=Hmox1 PE=1 SV=1	278.0	[0..1]	[232..1]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERPQPDSMP QDLSEALKEA TKEVHTQAEN AEFMRNFQKG QVTRDGFKLV MASLYHIYVA  60
   61 LEEEIERNKE SPVFAPVYFP EELHRKAALE QDLAFWYGPR WQEVIPYTPA MQRYVKRLHE 120
  121 VGRTEPELLV AHAYTRYLGD LSGGQVLKKI AQKALDLPSS GEGLAFFTFP NIASATKFKQ 180
  181 LYRSRMNSLE MTPAVRQRVI EEAKTAFLLN IQLFEELQEL LTHDTKDQSP SRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.522879
Match:	1n3uA
Description:	Heme oxygenase-1 (HO-1)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits