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View Structure Prediction Details

Protein: gi|52695595, gi|...
Organism: Caenorhabditis elegans
Length: 161 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52695595, gi|....

Description E-value Query
Range
Subject
Range
her-1 - HER-1 protein status:Partially_confirmed UniProt:P34704 protein_id:CAA94804.1
278.0 [0..2] [161..16]
gi|157764700 - gi|157764700|ref|XP_001674693.1| Hypothetical protein CBG19345 [Caenorhabditis briggsae AF16]
gi|39594654, gi|... - gi|39594654|emb|CAE72232.1| Hypothetical protein CBG19345 [Caenorhabditis briggsae], gi|187024571|em...
251.0 [0..3] [156..18]
gi|2199570 - gi|2199570|gb|AAB61377.1| Her-1 [Brugia malayi]
198.0 [0..18] [152..39]

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Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSSSTLTKEL IKDAAEKCCT RNRQECCIEI MKFGTPIRCG YDRDPKLPGY VYKCLQNVLF  60
   61 AKEPKKKINL DDSVCCSVFG NDQEDSGRRC ENRCKNLMTS PSIDAATRLD SIKSCSLLDN 120
  121 VLYKCFEKCR SLRKDGIKIE VLQFEEYCEA TFIQKRTFRG V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.69897
Match: 1szhA
Description: Crystal Structure of C. elegans HER-1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle