YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51247855, gi\|...
Organism:	Mus musculus
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51247855, gi|....

Description	E-value	Query Range	Subject Range
gi\|47221781 - gi\|47221781\|emb\|CAG08835.1\| unnamed protein product [Tetraodon nigroviridis]	151.0	[0..1]	[88..1039]
gi\|74204167 - gi\|74204167\|dbj\|BAE39846.1\| unnamed protein product [Mus musculus]	150.0	[0..4]	[88..2]
gi\|208965348 - gi\|208965348\|dbj\|BAG72688.1\| platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 4... PAFAH1B1 - platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)	150.0	[0..4]	[88..2]
gi\|109112726 - gi\|109112726\|ref\|XP_001087675.1\| PREDICTED: similar to platelet-activating factor acetylhydrolase be... LIS1_MACFA - Platelet-activating factor acetylhydrolase IB subunit alpha OS=Macaca fascicularis GN=PAFAH1B1 PE=2 ...	150.0	[0..4]	[88..2]
LIS1_PANTR - Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pan troglodytes GN=PAFAH1B1 PE=2 SV=3	150.0	[0..4]	[88..2]
LIS1_PIG - Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus scrofa GN=PAFAH1B1 PE=2 SV=3	150.0	[0..4]	[88..2]
LIS1_PONAB - Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3 LIS1_PONPY - Platelet-activating factor acetylhydrolase IB alpha subunit - Pongo pygmaeus (Orangutan)	150.0	[0..4]	[88..2]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAXVLSQRQR DELNRAIADY LRSNGYEEAY SVFKKEAELD XNEELDKKYA GLLEKKWTSV  60
   61 IRLQKKVXEL ESKLNEAKEE FTSGGPLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	1vyhC
Description:	PAF-AH Holoenzyme: Lis1/Alfa2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits