YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218195962
Organism:	Oryza sativa Indica Group
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218195962.

Description	E-value	Query Range	Subject Range
gi\|109130740 - gi\|109130740\|ref\|XP_001104863.1\| PREDICTED: similar to Mitochondrial import inner membrane transloca...	146.0	[0..6]	[145..39]
gi\|57111755 - gi\|57111755\|ref\|XP_538028.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	141.0	[0..17]	[145..1]
TIMM17B - translocase of inner mitochondrial membrane 17 homolog B (yeast) gi\|55662945 - gi\|55662945\|ref\|XP_521050.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	141.0	[0..17]	[145..1]
gi\|34933423, gi\|... - gi\|34933423\|ref\|XP_228758.2\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	141.0	[0..17]	[145..1]
TI17B_MOUSE - Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=1 SV=1	139.0	[0..17]	[145..1]
gi\|68365546 - gi\|68365546\|ref\|XP_690636.1\| PREDICTED: similar to protein translocase [Danio rerio]	139.0	[0..17]	[145..1]
gi\|91084573 - gi\|91084573\|ref\|XP_973821.1\| PREDICTED: similar to AGAP003199-PA [Tribolium castaneum]	139.0	[0..1]	[144..43]
gi\|76659462 - gi\|76659462\|ref\|XP_873411.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	138.0	[0..17]	[145..1]
Tim17b2-PB - The gene Translocase inner membrane 17 is referred to in FlyBase by the symbol Dmel\Tim17b2 (CG15257...	137.0	[0..17]	[144..1]

Back

Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRGGFSGSI SSPRIDVAID MGNPFLNRTV DGFLKIGAVG ACKVAAEDTF DCLHRGDVSK  60
   61 HKLEHMLKKM CKEGAYWGTV AGVYVGMEYG VERIRGRHDW KNAMIGGALS GALISAASNN 120
  121 HKDKIIKDAI TGGAVATAVE FINYLT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.585027
Match:	PF02466.10
Description:	No description for PF02466.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits