YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51247462, gi\|...
Organism:	Saccharomyces cerevisiae
Length:	144 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51247462, gi|....

Description	E-value	Query Range	Subject Range
gi\|115385915, gi... - gi\|115385915\|ref\|XP_001209504.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	149.0	[0..1]	[144..1]
gi\|46117090, gi\|... - gi\|46117090\|ref\|XP_384563.1\| hypothetical protein FG04387.1 [Gibberella zeae PH-1], gi\|42549925\|gb\|E...	146.0	[0..1]	[143..1]
gi\|39946654, gi\|... - gi\|39946654\|ref\|XP_362864.1\| hypothetical protein MG08573.4 [Magnaporthe grisea 70-15], gb\|EAA49658....	143.0	[0..1]	[144..1]
gi\|73992404 - gi\|73992404\|ref\|XP_542990.2\| PREDICTED: similar to Protein C20orf77 homolog [Canis familiaris]	143.0	[0..1]	[141..152]
gi\|109506377 - gi\|109506377\|ref\|XP_214609.4\| PREDICTED: similar to cDNA sequence BC021395 [Rattus norvegicus]	142.0	[0..1]	[144..128]
gi\|40743115, gi\|... - gi\|67537908\|ref\|XP_662728.1\| hypothetical protein AN5124.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	141.0	[0..1]	[137..1]
gi\|70991296, gi\|... - gi\|70991296\|ref\|XP_750497.1\| mRNA cleavage factor complex component Pcf11 [Aspergillus fumigatus Af2...	141.0	[0..1]	[137..1]
gi\|169764064 - gi\|169764064\|ref\|XP_001727932.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83770960 - gi\|83770960\|dbj\|BAE61093.1\| unnamed protein product [Aspergillus oryzae]	140.0	[0..1]	[137..1]
gi\|60360126 - gi\|60360126\|dbj\|BAD90282.1\| mKIAA4077 protein [Mus musculus]	139.0	[0..1]	[144..47]
gi\|90307534, gi\|... - gi\|90307534\|gb\|EAS37165.1\| hypothetical protein CIMG_02519 [Coccidioides immitis RS], gi\|119196289\|r...	139.0	[0..1]	[137..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHDTEVIVK DFNSILEELT FNSRPIITTL TKLAEENISC AQYFVDAIES RIEKCMPKQK  60
   61 LYAFYALDSI CKNVGSPYTI YFSRNLFNLY KRTYLLVDNT TRTKLINMFK LWLNPNDTGL 120
  121 PLFEGSALEK IEQFLIKASA AALE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1sz9A
Description:	The RNA polymerase II CTD in mRNA processing: beta-turn recognition and beta-spiral model
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.229007340928547	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: