YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51247348
Organism:	Homo sapiens
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51247348.

Description	E-value	Query Range	Subject Range
gi\|82499715, gi\|... - gi\|82499715\|ref\|ZP_00885154.1\| Thioredoxin [Caldicellulosiruptor saccharolyticus DSM 8903], gi\|82402...	131.0	[0..27]	[135..2]
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	131.0	[0..11]	[137..28]
gi\|33576644, gi\|... - gi\|33602206\|ref\|NP_889766.1\| thioredoxin 1 [Bordetella bronchiseptica RB50], gi\|33576644\|emb\|CAE3372...	130.0	[0..11]	[137..22]
gi\|91775514, gi\|... - gi\|91775514\|ref\|YP_545270.1\| thioredoxin [Methylobacillus flagellatus KT], gi\|91709501\|gb\|ABE49429.1...	130.0	[0..13]	[135..27]
gi\|33566268 - gi\|33566268\|emb\|CAE37179.1\| thioredoxin 1 [Bordetella parapertussis] gi\|33596499 - gi\|33596499\|ref\|NP_884142.1\| thioredoxin 1 [Bordetella parapertussis 12822] gi\|33592390, gi\|... - gi\|33592390\|ref\|NP_880034.1\| thioredoxin 1 [Bordetella pertussis Tohama I], gi\|33572035\|emb\|CAE41559...	130.0	[0..28]	[137..36]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	130.0	[0..2]	[137..12]
gi\|78358455, gi\|... - gi\|78358455\|ref\|YP_389904.1\| thioredoxin [Desulfovibrio desulfuricans subsp. desulfuricans str. G20]...	129.0	[0..13]	[135..27]
gi\|57282285 - gi\|57282285\|emb\|CAD32527.1\| putative thioredoxin [uncultured bacterium]	129.0	[0..13]	[135..47]
gi\|85711916, gi\|... - gi\|85711916\|ref\|ZP_01042971.1\| Thioredoxin [Idiomarina baltica OS145], gi\|85694313\|gb\|EAQ32256.1\| Th...	128.0	[0..28]	[136..3]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGSHHHHHH GMASSSDGHN GLGKGFGDHI HWRTLEDGKK EAAASGLPLM VIIHKSWCGA  60
   61 CKALKPKFAE STEISELSHN FVMVNLEDEE EPKDEDFSPD GGYIPRILFL DPSGKVHPEI 120
  121 INENGNPSYK YFYVSAEQVV QGMKEAQERL TGDAFRKKHL EDEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1senA
Description:	Endoplasmic reticulum protein Rp19 O95881
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.142133664747919	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: