YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47168665, gi\|...
Organism:	Escherichia coli
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47168665, gi|....

Description	E-value	Query Range	Subject Range
gi\|75195313 - gi\|75195313\|ref\|ZP_00705383.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|75190218 - gi\|75190218\|ref\|ZP_00703485.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|83587304 - gi\|83587304\|ref\|ZP_00925932.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|124529877, gi... - gi\|124529877\|ref\|ZP_01700721.1\| protein of unknown function DUF489 [Escherichia coli B], gi\|12449958... gi\|75511662 - gi\|75511662\|ref\|ZP_00734309.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|75255664 - gi\|75255664\|ref\|ZP_00727436.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|75228456 - gi\|75228456\|ref\|ZP_00715096.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|75214687 - gi\|75214687\|ref\|ZP_00713198.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|75209212 - gi\|75209212\|ref\|ZP_00709459.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche...	315.0	[0..2]	[213..4]
gi\|75179246 - gi\|75179246\|ref\|ZP_00699264.1\| COG2915: Uncharacterized protein involved in purine metabolism [Shige...	314.0	[0..2]	[213..4]
gi\|194433693, gi... - gi\|83569547\|ref\|ZP_00920999.1\| COG2915: Uncharacterized protein involved in purine metabolism [Shige...	314.0	[0..2]	[213..4]
gi\|75239630 - gi\|75239630\|ref\|ZP_00723597.1\| COG2915: Uncharacterized protein involved in purine metabolism [Esche... gi\|91071862, gi\|... - gi\|91210288\|ref\|YP_540274.1\| hypothetical protein UTI89_C1261 [Escherichia coli UTI89], gi\|91071862\|... gi\|26107781, gi\|... - gi\|26247380\|ref\|NP_753420.1\| hypothetical protein c1511 [Escherichia coli CFT073], gi\|26107781\|gb\|AA... gi\|110342901, gi... - gi\|110641309\|ref\|YP_669039.1\| hypothetical protein ECP_1127 [Escherichia coli 536], gi\|110342901\|gb\|... gi\|115512441, gi... - gi\|117623317\|ref\|YP_852230.1\| hypothetical protein APECO1_214 [Escherichia coli APEC O1], gi\|1155124... gi\|227886511, gi... - gi\|227886511\|ref\|ZP_04004316.1\| Ycfc protein [Escherichia coli 83972], gi\|227836715\|gb\|EEJ47181.1\| Y... gi\|226898092, gi... - gi\|237706882\|ref\|ZP_04537363.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	314.0	[0..2]	[213..4]
HFLD_SHISS - High frequency lysogenization protein HflD homolog OS=Shigella sonnei (strain Ss046) GN=hflD PE=3 SV... HFLD_SHIDS - High frequency lysogenization protein HflD homolog OS=Shigella dysenteriae serotype 1 (strain Sd197)... EG11345 - putative lysogenization regulator / Downregulates lambda lysogenization; interacts with cII protein;... YCFC_ECOLI - UPF0274 protein ycfC (ORF-23) - Escherichia coli HFLD_ECOBW - High frequency lysogenization protein HflD OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=hfl... gi\|254288047, gi... - gi\|254288047\|ref\|YP_003053795.1\| hypothetical protein ECD_01130 [Escherichia coli BL21(DE3)], gi\|253... gi\|251784661, gi... - gi\|251784661\|ref\|YP_002998965.1\| hypothetical protein B21_01138 [Escherichia coli BL21], gi\|24237693... gi\|254161239, gi... - gi\|254161239\|ref\|YP_003044347.1\| hypothetical protein ECB_01130 [Escherichia coli B str. REL606], gi... HFLD_ECOHS - High frequency lysogenization protein HflD OS=Escherichia coli O9:H4 (strain HS) GN=hflD PE=3 SV=1 gi\|194429559, gi... - gi\|194429559\|ref\|ZP_03062080.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194412433... HFLD_ECO24 - High frequency lysogenization protein HflD OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=h... gi\|193071709, gi... - gi\|193071709\|ref\|ZP_03052609.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192954... gi\|192926107, gi... - gi\|193066258\|ref\|ZP_03047310.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192926107\|... EG11345 - putative lysogenization regulator / Downregulates lambda lysogenization; interacts with cII protein;... gi\|191168318, gi... - gi\|191168318\|ref\|ZP_03030110.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190901613\|... HFLD_ECO8A - High frequency lysogenization protein HflD OS=Escherichia coli O8 (strain IAI1) GN=hflD PE=3 SV=1 HFLD_ESCF3 - High frequency lysogenization protein HflD OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 ... HFLD_ECOSE - High frequency lysogenization protein HflD OS=Escherichia coli (strain SE11) GN=hflD PE=3 SV=1 gi\|194424054, gi... - gi\|194437071\|ref\|ZP_03069170.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442405... HFLD_ECOLC - High frequency lysogenization protein HflD OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks... gi\|188490003, gi... - gi\|188494804\|ref\|ZP_03002074.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18849000... HFLD_ECODH - High frequency lysogenization protein HflD OS=Escherichia coli (strain K12 / DH10B) GN=hflD PE=3 SV=... gi\|89107978, gi\|... - gi\|89107978\|ref\|AP_001758.1\| predicted lysogenization regulator [Escherichia coli str. K-12 substr. ... gi\|195182819 - gi\|195182819\|dbj\|BAG66395.1\| predicted protein [Escherichia coli O111:H-] HFLD_ECOLU - High frequency lysogenization protein HflD OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) G... HFLD_ECO55 - High frequency lysogenization protein HflD OS=Escherichia coli (strain 55989 / EAEC) GN=hflD PE=3 SV...	314.0	[0..2]	[213..2]
HFLD_SHIBS - High frequency lysogenization protein HflD homolog OS=Shigella boydii serotype 4 (strain Sb227) GN=h... HFLD_SHIB3 - High frequency lysogenization protein HflD homolog OS=Shigella boydii serotype 18 (strain CDC 3083-9...	313.0	[0..2]	[213..2]
HFLD_SHIFL - High frequency lysogenization protein HflD homolog OS=Shigella flexneri GN=hflD PE=3 SV=2 HFLD_SHIF8 - High frequency lysogenization protein HflD homolog OS=Shigella flexneri serotype 5b (strain 8401) GN... gi\|30040927, gi\|... - gi\|30062679\|ref\|NP_836850.1\| hypothetical protein S1234 [Shigella flexneri 2a str. 2457T], gi\|300409... gi\|56479837, gi\|... - gi\|56479837\|ref\|NP_707061.2\| hypothetical protein SF1151 [Shigella flexneri 2a str. 301], gi\|5638338...	313.0	[0..2]	[213..2]
HFLD_ECOSM - High frequency lysogenization protein HflD OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hflD PE=3... HFLD_ECO27 - High frequency lysogenization protein HflD OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=h... gi\|190906675, gi... - gi\|191173130\|ref\|ZP_03034663.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190906675\|... HFLD_ECOL6, YCFC... - UPF0274 protein ycfC OS=Escherichia coli O6 GN=ycfC PE=3 SV=2, High frequency lysogenization protein... HFLD_ECOL6 - High frequency lysogenization protein HflD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / ... HFLD_ECO81 - High frequency lysogenization protein HflD OS=Escherichia coli O81 (strain ED1a) GN=hflD PE=3 SV=1 HFLD_ECO45 - High frequency lysogenization protein HflD OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=hflD P... HFLD_ECO7I - High frequency lysogenization protein HflD OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=hflD ... sp\|B7UQ41\|HFLD_ECO27 - High frequency lysogenization protein hflD OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=h...	313.0	[0..2]	[213..2]
gi\|16764588, gi\|... - gi\|16764588\|ref\|NP_460203.1\| hypothetical protein STM1233 [Salmonella typhimurium LT2], gi\|16419752\|... gi\|238910947 - gi\|238910947\|ref\|ZP_04654784.1\| hypothetical protein SentesTe_07407 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=ycfC] [protein=hypothetical protein] [protein_id=YP_005236993.1] [location=complement(1279735.... gi\|206709063, gi... - gi\|207857260\|ref\|YP_002243911.1\| hypothetical protein SEN1816 [Salmonella enterica subsp. enterica s... gi\|194713511, gi... - gi\|194738009\|ref\|YP_002114240.1\| hypothetical protein SeSA_A1312 [Salmonella enterica subsp. enteric... gi\|205272814, gi... - gi\|205353033\|ref\|YP_002226834.1\| hypothetical protein SG1888 [Salmonella enterica subsp. enterica se...	311.0	[0..2]	[213..4]
gi\|197301163, gi... - gi\|197301163\|ref\|ZP_02664198.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YCFC_SALTY - UPF0274 protein ycfC OS=Salmonella typhimurium GN=ycfC PE=3 SV=2 gi\|197265723, gi... - gi\|197265723\|ref\|ZP_03165797.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|200390142, gi... - gi\|200390142\|ref\|ZP_03216753.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... HFLD_SALTY - High frequency lysogenization protein HflD homolog OS=Salmonella typhimurium GN=hflD PE=3 SV=2 HFLD_SALPK - High frequency lysogenization protein HflD homolog OS=Salmonella paratyphi A (strain AKU_12601) GN=h... HFLD_SALHS - High frequency lysogenization protein HflD homolog OS=Salmonella heidelberg (strain SL476) GN=hflD P... HFLD_SALNS - High frequency lysogenization protein HflD homolog OS=Salmonella newport (strain SL254) GN=hflD PE=3... HFLD_SALA4 - High frequency lysogenization protein HflD homolog OS=Salmonella agona (strain SL483) GN=hflD PE=3 S... gi\|194458964, gi... - gi\|194472600\|ref\|ZP_03078584.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YCFC_SALPA, HFLD... - UPF0274 protein ycfC OS=Salmonella paratyphi A GN=ycfC PE=3 SV=1, High frequency lysogenization prot... gi\|195630375, gi... - gi\|195630375\|gb\|EDX49001.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... HFLD_SALPB - High frequency lysogenization protein HflD homolog OS=Salmonella paratyphi B (strain ATCC BAA-1250 /... YCFC_SALPB, HFLD... - UPF0274 protein ycfC OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ycfC PE=3 SV=1, High... gi\|205360750, gi... - gi\|205360750\|ref\|ZP_02686227.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205341205, gi... - gi\|205360060\|ref\|ZP_02834340.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... HFLD_SALTY - High frequency lysogenization protein HflD homolog OS=Salmonella typhimurium (strain LT2 / SGSC1412 ... HFLD_SALPA - High frequency lysogenization protein HflD homolog OS=Salmonella paratyphi A (strain ATCC 9150 / SAR... gi\|205357754, gi... - gi\|205357754\|ref\|ZP_02573076.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205357419, gi... - gi\|205357419\|ref\|ZP_02347545.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205336724, gi... - gi\|205359346\|ref\|ZP_02669239.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205332727, gi... - gi\|205358667\|ref\|ZP_02658173.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ...	311.0	[0..2]	[213..2]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAKNYYDITL ALAGICQSAR LVQQLAHQGH CDADALHVSL NSIIDMNPSS TLAVFGGSEA  60
   61 NLRVGLETLL GVLNASSRQG LNAELTRYTL SLMVLERKLS SAKGALDTLG NRINGLQRQL 120
  121 EHFDLQSETL MSAMAAIYVD VISPLGPRIQ VTGSPAVLQS PQVQAKVRAT LLAGIRAAVL 180
  181 WHQVGGGRLQ LMFSRNRLTT QAKQILAHLT PEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.69897
Match:	1qz4A
Description:	Structure of hypothetical Escherichia coli protein ycfC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits