YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157830712, gi...
Organism:	Escherichia coli
Length:	74 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157830712, gi....

Description	E-value	Query Range	Subject Range
gi\|223154 - gi\|223154\|prf\|\|0601198A polymerase beta,RNA	110.0	[0..7]	[74..1]
RK12_SPIOL - 50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=RPL12 PE=1 SV=2	102.0	[0..2]	[73..116]
RK121_ARATH - 50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=1	98.0	[0..2]	[73..118]
RL7_BLOPB - 50S ribosomal protein L7/L12 OS=Blochmannia pennsylvanicus (strain BPEN) GN=rplL PE=3 SV=1	95.0	[0..2]	[74..50]
gi\|50745477 - gi\|50745477\|ref\|XP_426233.1\| PREDICTED: similar to HGF-regulated tyrosine kinase substrate [Gallus g...	95.0	[0..2]	[73..757]
gi\|30410810 - gi\|30410810\|ref\|NP_660396.2\| 50S ribosomal protein L7/L12 [Buchnera aphidicola str. Sg (Schizaphis g...	95.0	[0..3]	[74..58]
gi\|92876745 - gi\|92876745\|gb\|ABE84067.1\| Ribosomal protein L7/12, oligomerisation [Medicago truncatula]	94.0	[0..2]	[74..122]
gi\|62262766 - gi\|62262766\|gb\|AAX78101.1\| unknown protein [synthetic construct]	93.0	[0..1]	[74..78]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAEEKTEFDV ILKAAGANKV AVIKAVRGAT GLGLKEAKDL VESAPAALKE GVSKDDAEAL  60
   61 KKALEEAGAE VEVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	1rquA
Description:	NMR structure of L7 dimer from E.coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits