YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218188591
Organism:	Oryza sativa Indica Group
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218188591.

Description	E-value	Query Range	Subject Range
gi\|102139975 - gi\|102139975\|gb\|ABF70110.1\| mitochondrial ATP synthase g subunit family protein [Musa balbisiana]	230.0	[0..1]	[122..1]
gi\|76160976 - gi\|76160976\|gb\|ABA40451.1\| unknown [Solanum tuberosum]	228.0	[0..1]	[121..1]
gi\|42573049, gi\|... - pir\|\|T06005 hypothetical protein T25K17.20 - Arabidopsis thaliana, gi\|7269472\|emb\|CAB79476.1\| putat...	225.0	[0..1]	[121..1]
gi\|48843828, gi\|... - gi\|50932457\|ref\|XP_475756.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|48843828\|g...	222.0	[0..1]	[122..4]
gi\|116060129 - gi\|116060129\|emb\|CAL56188.1\| unnamed protein product [Ostreococcus tauri]	127.0	[0..27]	[112..230]

Back

Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRLAQLRS KAAQASELVS KHGCAYYKEV MEKNKQHVVQ PPTVEKCQEL SKQLFYTRLA  60
   61 SLPGRYEAFW KEFDGVKQVW KNRKELKVED LGIVTLFGVE LYAWFCVGEI VGRGFTITGY 120
  121 KV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.031517
Match:	PF04718.6
Description:	No description for PF04718.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits