YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|82407763, gi\|...
Organism:	Homo sapiens
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|82407763, gi|....

Description	E-value	Query Range	Subject Range
gi\|25006237 - gi\|25006237\|dbj\|BAC24018.1\| GM2 activator protein [Rattus norvegicus]	230.0	[0..1]	[163..36]
SAP3_MACFA - Ganglioside GM2 activator OS=Macaca fascicularis GN=GM2A PE=2 SV=2	230.0	[0..1]	[164..27]
gi\|109079384 - gi\|109079384\|ref\|XP_001109570.1\| PREDICTED: similar to GM2 ganglioside activator precursor [Macaca m...	229.0	[0..1]	[164..27]
SAP3_MOUSE - Ganglioside GM2 activator OS=Mus musculus GN=Gm2a PE=1 SV=2	229.0	[0..1]	[163..30]
GM2A - GM2 ganglioside activator	225.0	[0..1]	[164..30]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HMSSFSWDNC DEGKDPAVIR SLTLEPDPIV VPGNVTLSVV GSTSVPLSSP LKVDLVLEKE  60
   61 VAGLWIKIPC TDYIGSCTFE HFCDVLDMLI PTGEPCPEPL RTYGLPCHCP FKEGTYSLPK 120
  121 SEFVVPDLEL PSWLTTGNYR IESVLSSSGK RLGCIKIAAS LKGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.221849
Match:	1pu5A
Description:	GM2-activator Protein crystal structure
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits