YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29726610, gi\|...
Organism:	Escherichia coli
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29726610, gi|....

Description	E-value	Query Range	Subject Range
gi\|46128809 - gi\|46128809\|ref\|ZP_00201937.1\| COG0775: Nucleoside phosphorylase [Haemophilus influenzae R2846]	198.0	[0..11]	[240..1]
MTNN_HAES1 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Haemophilus somnus (strain 129Pt) GN=m...	197.0	[0..11]	[239..1]
MTNN_HISS2 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Histophilus somni (strain 2336) GN=mtn...	195.0	[0..11]	[239..1]
gi\|42631518 - gi\|42631518\|ref\|ZP_00157056.1\| COG0775: Nucleoside phosphorylase [Haemophilus influenzae R2866]	195.0	[0..11]	[239..1]
gi\|46395046 - gi\|46395046\|gb\|AAS91661.1\| MTA/SAH nucleosidase; 5'-methylthioadenosine nucleosidase; S-adenosylhomo...	195.0	[0..11]	[239..1]
MTNN_HAEIN - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Haemophilus influenzae (strain ATCC 51... MTNN_HAEIN - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Haemophilus influenzae GN=mtnN PE=3 SV...	194.0	[0..11]	[239..1]
gi\|89095310, gi\|... - gi\|89095310\|ref\|ZP_01168229.1\| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Oceanospi...	194.0	[0..12]	[240..19]
MTNN_BACHD - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Bacillus halodurans (strain ATCC BAA-1... MTNN_BACHD - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Bacillus halodurans GN=mtnN PE=3 SV=1	194.0	[0..10]	[240..1]
MTNN_PHOLL - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Photorhabdus luminescens subsp. laumon... MTNN_PHOLL - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Photorhabdus luminescens subsp. laumon...	194.0	[0..11]	[241..1]
gi\|89084479, gi\|... - gi\|89100833\|ref\|ZP_01173685.1\| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Bacillus ...	194.0	[0..11]	[241..1]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQGAMDPEFS MKIGIIGAME EEVTLLRDKI ENRQTISLGG CEIYTGQLNG TEVALLKSGI  60
   61 GKVAAALGAT LLLEHCKPDV IINTGSAGGL APTLKVGDIV VSDEARYHDA DVTAFGYEYG 120
  121 QLPGCPAGFK ADDKLIAAAE ACIAELNLNA VRGLIVSGDA FINGSVGLAK IRHNFPQAIA 180
  181 VEMEATAIAH VCHNFNVPFV VVRAISDVAD QQSHLSFDEF LAVAAKQSSL MVESLVQKLA 240
  241 HG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	1jysA
Description:	5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
S-methyl-5-thioadenosine phosphorylase activity	3.89303327575747	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.66765825367784	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	3.65908655017573	bayes_pls_golite062009
catalytic activity	2.18268586151113	bayes_pls_golite062009
purine-nucleoside phosphorylase activity	1.46980781918487	bayes_pls_golite062009
binding	0.716947367672324	bayes_pls_golite062009
transferase activity	0.716715652241981	bayes_pls_golite062009
protein binding	0.294648445670962	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: