YRC Public Data Repository - Protein Structure Prediction

Protein:	POT1B_ARATH
Organism:	Arabidopsis thaliana
Length:	454 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POT1B_ARATH.

Description	E-value	Query Range	Subject Range
gi\|15239997, gi\|... - gi\|9758411\|dbj\|BAB08953.1\| unnamed protein product [Arabidopsis thaliana], ref\|NP_196249.1\| expresse...	448.0	[0..1]	[454..1]
gi\|116310357 - gi\|116310357\|emb\|CAH67370.1\| OSIGBa0128P10.4 [Oryza sativa (indica cultivar-group)] gi\|125590681 - gi\|125590681\|gb\|EAZ31031.1\| hypothetical protein OsJ_15115 [Oryza sativa Japonica Group]	429.0	[0..6]	[451..26]
gi\|125548652 - gi\|125548652\|gb\|EAY94474.1\| hypothetical protein OsI_015707 [Oryza sativa (indica cultivar-group)] gi\|50924926, gi\|... - gi\|50924926\|ref\|XP_472805.1\| OSJNBa0016O02.10 [Oryza sativa (japonica cultivar-group)], gi\|38606523\|...	425.0	[0..6]	[451..1009]
gi\|92872910 - gi\|92872910\|gb\|ABE81442.1\| Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula]	387.0	[0..2]	[451..4]
gi\|73975944 - gi\|73975944\|ref\|XP_851415.1\| PREDICTED: similar to Protection of telomeres 1 (hPot1) (POT1-like telo...	332.0	[0..1]	[389..302]
gi\|109068051, gi... - gi\|109068051\|ref\|XP_001087820.1\| PREDICTED: protection of telomeres 1 isoform 2 [Macaca mulatta], gi...	332.0	[0..1]	[403..1]
POTE1_MACFA - Protection of telomeres protein 1 OS=Macaca fascicularis GN=POT1 PE=2 SV=1	331.0	[0..1]	[403..1]

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Predicted Domain #1

Region A:
Residues: [1-454]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEERRDDYK FLRIQDAFKA LHLHVNLIGV IVELGFSNGS DCSCTLKIVD PWYSGSGLPV  60
   61 KFVARTIRDL PRVESIGDII LLSRVKIVLI NRKITALCNE TTSSSFALFN GKHSVDSIPY 120
  121 QSSPKFLMRE QDKNFLSNLR EWMITYKFED GSCCFTSLKD IKEGECSNLS CQIVHISKVY 180
  181 KDRWYLFVWD GTEMPPCNIL VKSERLPLCV EPEMLPTYML RKFPTFGSVL RIIVDRVSEK 240
  241 QAIHCLQPGQ HVKLLNLFFQ VNMGLWNATF TPSTKMQYTM SREMEAFSPQ RMCGEKFSPR 300
  301 WNPIARCISR SHSEITGVAH DDAPFVSLMD ILTYHNVTAK FRCVVRFIQV YPRDVRKLRD 360
  361 INGNIKLVAI LEDATARIHA SLYADEGEKF FGCDESDEEA LVKKLNRLLG GEEMEKVPRN 420
  421 PPWVQCCLFS FYKHKMDQWE SRRFRIFDTW INAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.522879
Match:	1jb7A
Description:	Telomere end binding protein alpha subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits