YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49259570
Organism:	Mus musculus
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49259570.

Description	E-value	Query Range	Subject Range
GGACT_RAT - Gamma-glutamylaminecyclotransferase OS=Rattus norvegicus GN=Ggact PE=2 SV=1	171.0	[0..13]	[161..1]
GGACT_MOUSE - Gamma-glutamylaminecyclotransferase OS=Mus musculus GN=Ggact PE=1 SV=1	170.0	[0..13]	[161..1]
gi\|13279332 - gi\|13279332\|gb\|AAH04360.1\| A2LD1 protein [Homo sapiens]	166.0	[0..13]	[161..64]
gi\|115974172, gi... - gi\|72149868\|ref\|XP_798364.1\| PREDICTED: similar to ENSANGP00000017416 [Strongylocentrotus purpuratus...	162.0	[0..14]	[161..3]
gi\|73989450 - gi\|73989450\|ref\|XP_542653.2\| PREDICTED: similar to CG2811-PA [Canis familiaris]	162.0	[0..13]	[161..64]
gi\|50730609 - gi\|50730609\|ref\|XP_416969.1\| PREDICTED: hypothetical protein isoform 2 [Gallus gallus]	160.0	[0..13]	[161..10]
GGACB_DANRE - Gamma-glutamylaminecyclotransferase B OS=Danio rerio GN=ggact.2 PE=2 SV=1	158.0	[0..13]	[160..1]
GGACT_BOVIN - Gamma-glutamylaminecyclotransferase OS=Bos taurus GN=GGACT PE=2 SV=1	156.0	[0..13]	[161..26]
gi\|66522151, gi\|... - gi\|66522154\|ref\|XP_623434.1\| PREDICTED: similar to CG2811-PA [Apis mellifera], gi\|66522151\|ref\|XP_62...	154.0	[0..13]	[160..10]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSDKIHHHH HHMAHIFVYG TLKRGQPNHK VMLDHSHGLA AFRGRGCTVE SFPLVIAGEH  60
   61 NIPWLLYLPG KGHCVTGEIY EVDEQMLRFL DDFEDCPSMY QRTALQVQVL EWEGDGDPGD 120
  121 SVQCFVYTTA TYAPEWLFLP YHESYDSEGP HGLRYNPREN R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.221849
Match:	1vkbA
Description:	Crystal structure of hypothetical protein from Mus musculus at 1.90 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits