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View Structure Prediction Details

Protein: gi|150261463, gi...
Organism: Arabidopsis thaliana
Length: 157 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|150261463, gi....

Description E-value Query
Range
Subject
Range
RDM1_ARATH - Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1
310.0 [0..2] [157..8]
gi|92886897 - gi|92886897|gb|ABE88532.1| Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g22...
280.0 [0..23] [155..166]
gi|115469046, gi... - gi|51535714|dbj|BAD37732.1| unknown protein [Oryza sativa Japonica Group], gi|51535316|dbj|BAD38576....
266.0 [0..25] [155..38]

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Predicted Domain #1
Region A:
Residues: [1-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SELRPSGDSG SSDVDAEISD GFSPLDTSHR DVADEGSLLR RAEMYQDYMK QVPIPTNRGS  60
   61 LIPFTSWVGL SISMKQLYGQ PLHYLTNVLL QRWDQSRFGT DSEEQRLDSI IHPTKAEATI 120
  121 WLVEEIHRLT PSHLHMALLW RSDPMYHSFI DPIFPEK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.39794
Match: 1vk5A
Description: X-ray Structure of Gene Product from Arabidopsis Thaliana At3g22680
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle