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View Structure Prediction Details

Protein: gi|162664795, gi...
Organism: Physcomitrella patens subsp. patens
Length: 289 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|162664795, gi....

Description E-value Query
Range
Subject
Range
SRS5_ARATH - Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=SRS5 PE=2 SV=1
312.0 [0..52] [286..102]
gi|125564471 - gi|125564471|gb|EAZ09851.1| hypothetical protein OsI_32143 [Oryza sativa Indica Group]
gi|52075936, gi|... - gi|52077219|dbj|BAD46263.1| putative LRP1 [Oryza sativa Japonica Group], gi|52075936|dbj|BAD46016.1|...
265.0 [0..73] [283..95]
gi|78499688 - gi|78499688|gb|ABB45842.1| hypothetical protein [Thellungiella halophila]
253.0 [0..69] [286..130]

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Predicted Domain #1
Region A:
Residues: [1-171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPWGARTLR DDVVRVMDVQ PLNEQPPSRQ ASQHNPQTAQ PNVDAASQVH QLQLDAAKHK  60
   61 LPQVSQVMGH GSTACQECGN QAKKDCSFQR CRTCCKSRDF DCATHVKSTW VPASKRRERQ 120
  121 AAEAAAAAAG QPRPKSKRAR TLALSVPAGA TTSMTTTSAN SPRGSDINSG H

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.951
Match: 1pyiA
Description: PPR1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [172-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSQPAQGRGG LPPEVRAQAL FKCVRVTGVE DGENECAYQA TVKIGGHIFK GLLYDQGLDL  60
   61 APPAVTSNPS ELHLGGGGAG GVRSNLPSSS PLLDPSGMYG PGNALLGGED SRVPPWFT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle