YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49259219, gi\|...
Organism:	Homo sapiens
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49259219, gi|....

Description	E-value	Query Range	Subject Range
gi\|92096024 - gi\|92096024\|gb\|AAI15038.1\| BRCA1 protein [Homo sapiens]	176.0	[0..1]	[214..1137]
gi\|61365365 - gi\|61365365\|gb\|AAX42696.1\| breast cancer 1 early onset [synthetic construct]	173.0	[0..1]	[214..1646]
BRCA1_PONPY - Breast cancer type 1 susceptibility protein homolog OS=Pongo pygmaeus GN=BRCA1 PE=3 SV=1	173.0	[0..1]	[214..1646]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNKRMSMVVS GLTPEEFMLV YKFARKHHIT LTNLITEETT HVVMKTDAEF VCERTLKYFL  60
   61 GIAGGKWVVS YFWVTQSIKE RKMLNEHDFE VRGDVVNGRN HQGPKRARES QDRKIFRGLE 120
  121 ICCYGPFTNM PTDQLEWMVQ LCGASVVKEL SSFTLGTGVH PIVVVQPDAW TEDNGFHAIG 180
  181 QMCEAPVVTR EWVLDSVALY QCQELDTYLI PQIP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.522879
Match:	1jnxX
Description:	Breast cancer associated protein, BRCA1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits